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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
347719-347927
(-)
cobalamin
346907-347621 (-)
cbiM
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
sce0249
Operon
DOOR ID:
379018
sce0245
(cbiX)
,
sce0246
(cbiO)
,
sce0247
(cbiQ)
,
sce0248,
sce0249
(cbiM)
View Structure
2
1313939-1314117
(+)
cobalamin
1314369-1316571 (+)
sce0927
TonB-dependent receptor; putative
sce0927
Single gene
DOOR ID:
2193406
sce0927
View Structure
3
1674959-1675073
(-)
SAM-IV
1673467-1674796 (-)
sce1210
sce1210
Single gene
DOOR ID:
2193559
sce1210
View Structure
4
5390207-5390415
(+)
cobalamin
5390668-5393185 (+)
nrdA2
Ribonucleoside-diphosphate reductase
sce3875
Operon
DOOR ID:
379692
sce3875
(nrdA2)
,
sce3876
(nrdB)
View Structure
5
5397699-5397926
(-)
cobalamin
5395461-5397492 (-)
sce3878
Putative outer membrane protein
sce3878
Single gene
DOOR ID:
2194945
sce3878
View Structure
6
7103808-7103878
(+)
SAH
7104153-7105593 (+)
gltD
Glutamate synthase (NADPH) (3)
sce5061
Operon
DOOR ID:
379903
sce5060
(gltB1)
,
sce5061
(gltD)
,
sce5062
View Structure
7
8118865-8118933
(-)
SAH
8117797-8118286 (-)
sce5779
Acyl-CoA thioester hydrolase
sce5779
Single gene
DOOR ID:
2196010
sce5779
View Structure
8
8188291-8188360
(-)
ykkC-III
8187951-8188269 (-)
sugE
sce5831
operon
DOOR ID:
380026
sce5828,
sce5829,
sce5830,
sce5831
(sugE)
View Structure
9
10479428-10479495
(+)
SAH
10484949-10485897 (-)
sce7530
sce7530
Operon
DOOR ID:
380327
sce7530,
sce7531
View Structure
10
11404110-11404205
(+)
SAH
11405316-11407743 (+)
sce8195
Helicase-related protein
sce8195
Single gene
DOOR ID:
2197275
sce8195
View Structure
Genome:
Sorangium cellulosum 'So ce 56'
(
NC_010162.1
);
Phylum:
delta/epsilon subdivisions
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"347719-347927";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"346907-347621";i:10;s:1:"-";i:11;s:4:"cbiM";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:7:"sce0249";i:14;s:6:"Operon";i:15;s:6:"379018";i:16;s:63:"sce0245(cbiX);sce0246(cbiO);sce0247(cbiQ);sce0248;sce0249(cbiM)";i:17;s:78:"cobalamin biosynthetic process [GO:0009236]; cobalt ion transport [GO:0006824]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1313939-1314117";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1314369-1316571";i:10;s:1:"+";i:11;s:7:"sce0927";i:12;s:33:"TonB-dependent receptor; putative";i:13;s:7:"sce0927";i:14;s:11:"Single gene";i:15;s:7:"2193406";i:16;s:7:"sce0927";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1674959-1675073";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1673467-1674796";i:10;s:1:"-";i:11;s:7:"sce1210";i:12;s:0:"";i:13;s:7:"sce1210";i:14;s:11:"Single gene";i:15;s:7:"2193559";i:16;s:7:"sce1210";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5390207-5390415";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5390668-5393185";i:10;s:1:"+";i:11;s:5:"nrdA2";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:7:"sce3875";i:14;s:6:"Operon";i:15;s:6:"379692";i:16;s:28:"sce3875(nrdA2);sce3876(nrdB)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"5397699-5397926";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5395461-5397492";i:10;s:1:"-";i:11;s:7:"sce3878";i:12;s:31:"Putative outer membrane protein";i:13;s:7:"sce3878";i:14;s:11:"Single gene";i:15;s:7:"2194945";i:16;s:7:"sce3878";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"7103808-7103878";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"7104153-7105593";i:10;s:1:"+";i:11;s:4:"gltD";i:12;s:30:"Glutamate synthase (NADPH) (3)";i:13;s:7:"sce5061";i:14;s:6:"Operon";i:15;s:6:"379903";i:16;s:36:"sce5060(gltB1);sce5061(gltD);sce5062";i:17;s:43:"glutamate biosynthetic process [GO:0006537]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"8118865-8118933";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"8117797-8118286";i:10;s:1:"-";i:11;s:7:"sce5779";i:12;s:28:"Acyl-CoA thioester hydrolase";i:13;s:7:"sce5779";i:14;s:11:"Single gene";i:15;s:7:"2196010";i:16;s:7:"sce5779";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"8188291-8188360";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"8187951-8188269";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"sce5831";i:14;s:6:"operon";i:15;s:6:"380026";i:16;s:37:"sce5828;sce5829;sce5830;sce5831(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:17:"10479428-10479495";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:17:"10484949-10485897";i:10;s:1:"-";i:11;s:7:"sce7530";i:12;s:0:"";i:13;s:7:"sce7530";i:14;s:6:"Operon";i:15;s:6:"380327";i:16;s:15:"sce7530;sce7531";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010162.1";i:2;s:32:"Sorangium cellulosum 'So ce 56' ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:17:"11404110-11404205";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:17:"11405316-11407743";i:10;s:1:"+";i:11;s:7:"sce8195";i:12;s:24:"Helicase-related protein";i:13;s:7:"sce8195";i:14;s:11:"Single gene";i:15;s:7:"2197275";i:16;s:7:"sce8195";i:17;s:0:"";i:18;s:15:"View Structure ";}}