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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
621685-621793
(+)
TPP
621860-623741 (+)
thiC
GDI_0613
Single gene
DOOR ID:
2188906
GDI_0613
(thiC)
View Structure
2
676688-676906
(-)
cobalamin
674423-676520 (-)
GDI_0667
GDI_0667
Operon
DOOR ID:
377164
GDI_0663,
GDI_0664
(fecE)
,
GDI_0665,
GDI_0666,
GDI_0667
View Structure
3
796942-797022
(-)
sam-alpha
795615-796866 (-)
metB
GDI_0780
Single gene
DOOR ID:
2188985
GDI_0780
(metB)
View Structure
4
1150732-1150901
(-)
FMN
1149482-1150583 (-)
ribD
GDI_1154
Operon
DOOR ID:
377253
GDI_1151
(ribH)
,
GDI_1152
(ribAB)
,
GDI_1153
(ribE)
,
GDI_1154
(ribD)
View Structure
5
2382085-2382172
(-)
glycine
2380770-2382000 (-)
gcvT
GDI_2317
Operon
DOOR ID:
377506
GDI_2315
(gcvP)
,
GDI_2316
(gcvH)
,
GDI_2317
(gcvT)
View Structure
6
2668346-2668548
(-)
cobalamin
2665881-2668239 (-)
metE
GDI_2572
Operon
DOOR ID:
377569
GDI_2570,
GDI_2571,
GDI_2572
(metE)
View Structure
7
3849819-3849897
(-)
fluoride
3848408-3849782 (-)
clcB
GDI_3763
Single gene
DOOR ID:
2189987
GDI_3763
(clcB)
View Structure
8
3856597-3856660
(-)
fluoride
3854956-3856552 (-)
GDI_3769
GDI_3769
Operon
DOOR ID:
377809
GDI_3768,
GDI_3769
View Structure
Genome:
Gluconacetobacter diazotrophicus PAl 5
(
NC_010125.1
);
Phylum:
Alphaproteobacteria
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