RiboswitchDB

Genome: Brucella canis ATCC 23365 chromosome II (NC_010104.1); Phylum: Alphaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

297626-297839 (+)

cobalamin

298190-298412 (+)

nrdH

Glutaredoxin-like protein NrdH

Operon

DOOR ID: 375972

BCAN_B0315 (nrdH),
BCAN_B0316 (nrdI),
BCAN_B0317,
BCAN_B0318 (nrdF)

2

673354-673517 (+)

FMN

673593-674070 (+)

BCAN_B0695

6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)

Single gene

DOOR ID: 2186699

BCAN_B0695

3

712599-712683 (-)

glycine

711347-712451 (-)

gcvT

Glycine cleavage system T protein

Operon

DOOR ID: 376055

BCAN_B0730 (gcvP),
BCAN_B0731 (gcvH),
BCAN_B0732 (gcvT)

4

737702-737934 (-)

cobalamin

736467-737502 (-)

BCAN_B0764

Periplasmic binding protein

Operon

DOOR ID: 376061

BCAN_B0762,
BCAN_B0763,
BCAN_B0764,
BCAN_B0765

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010104.1";i:2;s:39:"Brucella canis ATCC 23365 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"673354-673517";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"673593-674070";i:10;s:1:"+";i:11;s:10:"BCAN_B0695";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"BCAN_B0695";i:14;s:11:"Single gene";i:15;s:7:"2186699";i:16;s:10:"BCAN_B0695";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010104.1";i:2;s:39:"Brucella canis ATCC 23365 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"712599-712683";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"711347-712451";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"BCAN_B0732";i:14;s:6:"Operon";i:15;s:6:"376055";i:16;s:50:"BCAN_B0730(gcvP);BCAN_B0731(gcvH);BCAN_B0732(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010104.1";i:2;s:39:"Brucella canis ATCC 23365 chromosome II";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"737702-737934";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"736467-737502";i:10;s:1:"-";i:11;s:10:"BCAN_B0764";i:12;s:27:"Periplasmic binding protein";i:13;s:10:"BCAN_B0764";i:14;s:6:"Operon";i:15;s:6:"376061";i:16;s:43:"BCAN_B0762;BCAN_B0763;BCAN_B0764;BCAN_B0765";i:17;s:0:"";i:18;s:15:"View Structure
";}}