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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
227933-228039
(-)
TPP
226970-227846 (-)
thiD
Phosphomethylpyrimidine kinase
BCAN_A0220
Operon
DOOR ID:
375540
BCAN_A0213,
BCAN_A0214,
BCAN_A0215,
BCAN_A0216
(thiE)
,
BCAN_A0217
(thiG)
,
BCAN_A0218
(thiS)
,
BCAN_A0219
(thiO)
,
BCAN_A0220
(thiD)
View Structure
2
318070-318149
(-)
sam-alpha
317968-318064 (-)
BCAN_A0312
BCAN_A0312
Operon
DOOR ID:
375559
BCAN_A0311
(metZ)
,
BCAN_A0312
View Structure
3
1269525-1269762
(-)
cobalamin
1269285-1269474 (-)
cbtB
Cobalt transporter subunit CbtB (Proposed)
BCAN_A1333
Operon
DOOR ID:
375755
BCAN_A1327,
BCAN_A1328
(cobO)
,
BCAN_A1329
(cobN)
,
BCAN_A1330
(cobW)
,
BCAN_A1331
(cobU)
,
BCAN_A1332
(cbtA)
,
BCAN_A1333
(cbtB)
View Structure
4
1307912-1308140
(-)
cobalamin
1305892-1307755 (-)
BCAN_A1374
TonB-dependent receptor
BCAN_A1374
Operon
DOOR ID:
375762
BCAN_A1371
(cbrD)
,
BCAN_A1372,
BCAN_A1373,
BCAN_A1374
View Structure
5
1680151-1680197
(+)
glutamine
1680360-1681797 (-)
pyk
Pyruvate kinase (0)
BCAN_A1786
Operon
DOOR ID:
375837
BCAN_A1786
(pyk)
,
BCAN_A1787
View Structure
6
1686973-1687143
(+)
TPP
1687184-1688189 (+)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter binding protein
BCAN_A1796
Operon
DOOR ID:
375840
BCAN_A1796
(tbpA)
,
BCAN_A1797
(thiP)
,
BCAN_A1798
View Structure
Genome:
Brucella canis ATCC 23365 chromosome I
(
NC_010103.1
);
Phylum:
Alphaproteobacteria
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"227933-228039";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226970-227846";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:10:"BCAN_A0220";i:14;s:6:"Operon";i:15;s:6:"375540";i:16;s:117:"BCAN_A0213;BCAN_A0214;BCAN_A0215;BCAN_A0216(thiE);BCAN_A0217(thiG);BCAN_A0218(thiS);BCAN_A0219(thiO);BCAN_A0220(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"318070-318149";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"317968-318064";i:10;s:1:"-";i:11;s:10:"BCAN_A0312";i:12;s:0:"";i:13;s:10:"BCAN_A0312";i:14;s:6:"Operon";i:15;s:6:"375559";i:16;s:27:"BCAN_A0311(metZ);BCAN_A0312";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1269525-1269762";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1269285-1269474";i:10;s:1:"-";i:11;s:4:"cbtB";i:12;s:42:"Cobalt transporter subunit CbtB (Proposed)";i:13;s:10:"BCAN_A1333";i:14;s:6:"Operon";i:15;s:6:"375755";i:16;s:112:"BCAN_A1327;BCAN_A1328(cobO);BCAN_A1329(cobN);BCAN_A1330(cobW);BCAN_A1331(cobU);BCAN_A1332(cbtA);BCAN_A1333(cbtB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1307912-1308140";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1305892-1307755";i:10;s:1:"-";i:11;s:10:"BCAN_A1374";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"BCAN_A1374";i:14;s:6:"Operon";i:15;s:6:"375762";i:16;s:49:"BCAN_A1371(cbrD);BCAN_A1372;BCAN_A1373;BCAN_A1374";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1680151-1680197";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1680360-1681797";i:10;s:1:"-";i:11;s:3:"pyk";i:12;s:19:"Pyruvate kinase (0)";i:13;s:10:"BCAN_A1786";i:14;s:6:"Operon";i:15;s:6:"375837";i:16;s:26:"BCAN_A1786(pyk);BCAN_A1787";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010103.1";i:2;s:38:"Brucella canis ATCC 23365 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1686973-1687143";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1687184-1688189";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:61:"Thiamin/thiamin pyrophosphate ABC transporter binding protein";i:13;s:10:"BCAN_A1796";i:14;s:6:"Operon";i:15;s:6:"375840";i:16;s:44:"BCAN_A1796(tbpA);BCAN_A1797(thiP);BCAN_A1798";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}