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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
120810-120909
(-)
TPP
119794-120778 (-)
tbpA
SPAB_00135
Operon
DOOR ID:
374441
SPAB_00133
(thiQ)
,
SPAB_00134
(thiP)
,
SPAB_00135
(tbpA)
View Structure
2
803859-803955
(+)
TPP
803986-804784 (+)
SPAB_00876
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SPAB_00876
Operon
DOOR ID:
374586
SPAB_00876,
SPAB_00877,
SPAB_00878
View Structure
3
974494-974669
(+)
cobalamin
974765-976145 (+)
SPAB_01070
SPAB_01070
Operon
DOOR ID:
374617
SPAB_01070,
SPAB_01071
(cbiB)
,
SPAB_01072
(cbiC)
,
SPAB_01073
(cbiD)
,
SPAB_01074,
SPAB_01075,
SPAB_01076,
SPAB_01077,
SPAB_01078,
SPAB_01079,
SPAB_01080,
SPAB_01081,
SPAB_01082,
SPAB_01083,
SPAB_01084,
SPAB_01085
(cbiO)
,
SPAB_01086,
SPAB_01087
(cobU)
,
SPAB_01088
(cobS)
,
SPAB_01089
(cobT)
View Structure
4
1187647-1187748
(-)
yybP-ykoY
1186968-1187535 (-)
SPAB_01380
Probable manganese efflux pump MntP
SPAB_01380
Single gene
DOOR ID:
2183692
SPAB_01380
View Structure
5
2253583-2253727
(-)
MOCO
2252071-2252584 (-)
SPAB_02713
SPAB_02713
Operon
DOOR ID:
374912
SPAB_02709,
SPAB_02710
(moaE)
,
SPAB_02711
(moaD)
,
SPAB_02712
(moaC)
,
SPAB_02713,
SPAB_02714
(moaA)
View Structure
6
3318968-3319166
(-)
FMN
3318208-3318862 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SPAB_03988
Single gene
DOOR ID:
2184797
SPAB_03988
(ribB)
View Structure
7
4289241-4289434
(+)
cobalamin
4289499-4291344 (+)
btuB
SPAB_05115
Operon
DOOR ID:
375372
SPAB_05115
(btuB)
,
SPAB_05116
View Structure
8
4323329-4323492
(-)
TPP
4321347-4323243 (-)
SPAB_05154
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SPAB_05154
Operon
DOOR ID:
375379
SPAB_05149
(thiH)
,
SPAB_05150
(thiG)
,
SPAB_05151,
SPAB_05152,
SPAB_05153,
SPAB_05154
View Structure
9
4595203-4595247
(+)
mini-ykkC
4595268-4595586 (+)
sugE
SPAB_05469
Operon
DOOR ID:
375436
SPAB_05468,
SPAB_05469
View Structure
10
4716193-4716305
(+)
Mg sensor
4716401-4719110 (+)
SPAB_05610
SPAB_05610
Single gene
DOOR ID:
2185419
SPAB_05610
View Structure
Genome:
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
(
NC_010102.1
);
Phylum:
Gammaproteobacteria
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SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"120810-120909";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"119794-120778";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"SPAB_00135";i:14;s:6:"Operon";i:15;s:6:"374441";i:16;s:50:"SPAB_00133(thiQ);SPAB_00134(thiP);SPAB_00135(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"803859-803955";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"803986-804784";i:10;s:1:"+";i:11;s:10:"SPAB_00876";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"SPAB_00876";i:14;s:6:"Operon";i:15;s:6:"374586";i:16;s:32:"SPAB_00876;SPAB_00877;SPAB_00878";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"974494-974669";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"974765-976145";i:10;s:1:"+";i:11;s:10:"SPAB_01070";i:12;s:0:"";i:13;s:10:"SPAB_01070";i:14;s:6:"Operon";i:15;s:6:"374617";i:16;s:261:"SPAB_01070;SPAB_01071(cbiB);SPAB_01072(cbiC);SPAB_01073(cbiD);SPAB_01074;SPAB_01075;SPAB_01076;SPAB_01077;SPAB_01078;SPAB_01079;SPAB_01080;SPAB_01081;SPAB_01082;SPAB_01083;SPAB_01084;SPAB_01085(cbiO);SPAB_01086;SPAB_01087(cobU);SPAB_01088(cobS);SPAB_01089(cobT)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1187647-1187748";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1186968-1187535";i:10;s:1:"-";i:11;s:10:"SPAB_01380";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"SPAB_01380";i:14;s:11:"Single gene";i:15;s:7:"2183692";i:16;s:10:"SPAB_01380";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2253583-2253727";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2252071-2252584";i:10;s:1:"-";i:11;s:10:"SPAB_02713";i:12;s:0:"";i:13;s:10:"SPAB_02713";i:14;s:6:"Operon";i:15;s:6:"374912";i:16;s:89:"SPAB_02709;SPAB_02710(moaE);SPAB_02711(moaD);SPAB_02712(moaC);SPAB_02713;SPAB_02714(moaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3318968-3319166";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3318208-3318862";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"SPAB_03988";i:14;s:11:"Single gene";i:15;s:7:"2184797";i:16;s:16:"SPAB_03988(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4289241-4289434";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4289499-4291344";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:10:"SPAB_05115";i:14;s:6:"Operon";i:15;s:6:"375372";i:16;s:27:"SPAB_05115(btuB);SPAB_05116";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4323329-4323492";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4321347-4323243";i:10;s:1:"-";i:11;s:10:"SPAB_05154";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"SPAB_05154";i:14;s:6:"Operon";i:15;s:6:"375379";i:16;s:77:"SPAB_05149(thiH);SPAB_05150(thiG);SPAB_05151;SPAB_05152;SPAB_05153;SPAB_05154";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4595203-4595247";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4595268-4595586";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"SPAB_05469";i:14;s:6:"Operon";i:15;s:6:"375436";i:16;s:21:"SPAB_05468;SPAB_05469";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010102.1";i:2;s:66:"Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4716193-4716305";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4716401-4719110";i:10;s:1:"+";i:11;s:10:"SPAB_05610";i:12;s:0:"";i:13;s:10:"SPAB_05610";i:14;s:11:"Single gene";i:15;s:7:"2185419";i:16;s:10:"SPAB_05610";i:17;s:0:"";i:18;s:15:"View Structure ";}}