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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
161214-161345
(-)
glycine
160010-161129 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bmul_0143
Operon
DOOR ID:
372850
Bmul_0142,
Bmul_0143
(gcvT)
View Structure
2
161380-161483
(-)
glycine
160010-161129 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bmul_0143
Operon
DOOR ID:
372850
Bmul_0142,
Bmul_0143
(gcvT)
View Structure
3
202997-203111
(+)
SAH
203145-204564 (+)
Bmul_0180
Bmul_0180
Single gene
DOOR ID:
2180069
Bmul_0180
View Structure
4
347192-347313
(+)
TPP
347534-348671 (+)
Bmul_0313
Bmul_0313
Operon
DOOR ID:
372882
Bmul_0313,
Bmul_0314,
Bmul_0315
(thiG)
,
Bmul_0316
View Structure
5
667957-668105
(+)
FMN
668223-668934 (+)
Bmul_0609
Bmul_0609
Single gene
DOOR ID:
2180227
Bmul_0609
View Structure
6
914903-915157
(+)
cobalamin
915330-916683 (+)
Bmul_0839
Bmul_0839
Operon
DOOR ID:
372984
Bmul_0839,
Bmul_0840,
Bmul_0841
(cobT)
,
Bmul_0842
(cobS)
,
Bmul_0843
View Structure
7
1091802-1091846
(+)
mini-ykkC
1091868-1092189 (+)
Bmul_0996
Bmul_0996
Single gene
DOOR ID:
2180395
Bmul_0996
View Structure
8
1718729-1718918
(+)
cobalamin
1718952-1720404 (+)
Bmul_1568
Bmul_1568
Operon
DOOR ID:
373145
Bmul_1568,
Bmul_1569
(cobH)
,
Bmul_1570,
Bmul_1571
View Structure
9
1738933-1739192
(-)
cobalamin
1737702-1738761 (-)
Bmul_1584
Bmul_1584
Single gene
DOOR ID:
2180605
Bmul_1584
View Structure
10
1739255-1739488
(+)
cobalamin
1740424-1740799 (+)
Bmul_1586
Bmul_1586
Operon
DOOR ID:
373148
Bmul_1585,
Bmul_1586,
Bmul_1587,
Bmul_1588
View Structure
11
2277337-2277454
(+)
TPP
2277574-2279506 (+)
Bmul_2081
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bmul_2081
Single gene
DOOR ID:
2180779
Bmul_2081
View Structure
12
2591521-2591705
(+)
yybP-ykoY
2592396-2593107 (-)
Bmul_2379
Bmul_2379
Single gene
DOOR ID:
2180876
Bmul_2379
View Structure
13
2806571-2806670
(-)
ZMP-ZTP
2805186-2806434 (-)
glyA
Bmul_2581
Operon
DOOR ID:
373353
Bmul_2580
(nrdR)
,
Bmul_2581
(glyA)
View Structure
Genome:
Burkholderia multivorans ATCC 17616 chromosome I
(
NC_010084.1
);
Phylum:
Betaproteobacteria
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[GO:0006546]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"161380-161483";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"160010-161129";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"Bmul_0143";i:14;s:6:"Operon";i:15;s:6:"372850";i:16;s:25:"Bmul_0142;Bmul_0143(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"202997-203111";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"203145-204564";i:10;s:1:"+";i:11;s:9:"Bmul_0180";i:12;s:0:"";i:13;s:9:"Bmul_0180";i:14;s:11:"Single gene";i:15;s:7:"2180069";i:16;s:9:"Bmul_0180";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"347192-347313";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"347534-348671";i:10;s:1:"+";i:11;s:9:"Bmul_0313";i:12;s:0:"";i:13;s:9:"Bmul_0313";i:14;s:6:"Operon";i:15;s:6:"372882";i:16;s:45:"Bmul_0313;Bmul_0314;Bmul_0315(thiG);Bmul_0316";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"667957-668105";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"668223-668934";i:10;s:1:"+";i:11;s:9:"Bmul_0609";i:12;s:0:"";i:13;s:9:"Bmul_0609";i:14;s:11:"Single gene";i:15;s:7:"2180227";i:16;s:9:"Bmul_0609";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"914903-915157";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"915330-916683";i:10;s:1:"+";i:11;s:9:"Bmul_0839";i:12;s:0:"";i:13;s:9:"Bmul_0839";i:14;s:6:"Operon";i:15;s:6:"372984";i:16;s:61:"Bmul_0839;Bmul_0840;Bmul_0841(cobT);Bmul_0842(cobS);Bmul_0843";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1091802-1091846";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1091868-1092189";i:10;s:1:"+";i:11;s:9:"Bmul_0996";i:12;s:0:"";i:13;s:9:"Bmul_0996";i:14;s:11:"Single gene";i:15;s:7:"2180395";i:16;s:9:"Bmul_0996";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1718729-1718918";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1718952-1720404";i:10;s:1:"+";i:11;s:9:"Bmul_1568";i:12;s:0:"";i:13;s:9:"Bmul_1568";i:14;s:6:"Operon";i:15;s:6:"373145";i:16;s:45:"Bmul_1568;Bmul_1569(cobH);Bmul_1570;Bmul_1571";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1738933-1739192";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1737702-1738761";i:10;s:1:"-";i:11;s:9:"Bmul_1584";i:12;s:0:"";i:13;s:9:"Bmul_1584";i:14;s:11:"Single gene";i:15;s:7:"2180605";i:16;s:9:"Bmul_1584";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1739255-1739488";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1740424-1740799";i:10;s:1:"+";i:11;s:9:"Bmul_1586";i:12;s:0:"";i:13;s:9:"Bmul_1586";i:14;s:6:"Operon";i:15;s:6:"373148";i:16;s:39:"Bmul_1585;Bmul_1586;Bmul_1587;Bmul_1588";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2277337-2277454";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2277574-2279506";i:10;s:1:"+";i:11;s:9:"Bmul_2081";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Bmul_2081";i:14;s:11:"Single gene";i:15;s:7:"2180779";i:16;s:9:"Bmul_2081";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2591521-2591705";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2592396-2593107";i:10;s:1:"-";i:11;s:9:"Bmul_2379";i:12;s:0:"";i:13;s:9:"Bmul_2379";i:14;s:11:"Single gene";i:15;s:7:"2180876";i:16;s:9:"Bmul_2379";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010084.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2806571-2806670";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2805186-2806434";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:9:"Bmul_2581";i:14;s:6:"Operon";i:15;s:6:"373353";i:16;s:31:"Bmul_2580(nrdR);Bmul_2581(glyA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
