About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
127004-127177
(-)
lysine
125284-126898 (-)
lhv_0123
Amino acid ABC transporter permease protein
lhv_0123
Operon
DOOR ID:
372546
lhv_0122,
lhv_0123
View Structure
2
232404-232566
(+)
ykoK
232651-235240 (+)
lhv_0228
Cation transporting P-type ATPase
lhv_0228
Operon
DOOR ID:
372568
lhv_0228,
lhv_0229,
lhv_0230,
lhv_0231,
lhv_0232
(ksgA)
View Structure
3
259174-259271
(-)
purine
258486-259065 (-)
lhv_0253
Xanthine phosphoribosyltransferase (XPRTase) (2)
lhv_0253
Operon
DOOR ID:
372572
lhv_0252,
lhv_0253
View Structure
4
354573-354740
(+)
ykoK
354780-357495 (+)
lhv_0360
Magnesium-translocating P-type ATPase
lhv_0360
Single gene
DOOR ID:
2179427
lhv_0360
View Structure
5
892454-892629
(+)
lysine
892721-894038 (+)
lhv_0905
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
lhv_0905
Operon
DOOR ID:
372665
lhv_0905,
lhv_0906,
lhv_0907,
lhv_0908,
lhv_0909,
lhv_0910,
lhv_0911
View Structure
6
1035148-1035260
(+)
FMN
1035341-1036031 (+)
lhv_1057
Riboflavin transporter
lhv_1057
Single gene
DOOR ID:
2179646
lhv_1057
View Structure
7
1061364-1061422
(+)
fluoride
1061463-1061847 (+)
lhv_2500
Putative fluoride ion transporter CrcB
lhv_2500
Operon
DOOR ID:
372686
lhv_2500,
lhv_2501
View Structure
8
1692488-1692576
(-)
SMK_box
1689811-1691272 (-)
lhv_1730
Multidrug transporter
lhv_1730
Operon
DOOR ID:
372775
lhv_1730,
lhv_1731
View Structure
9
1924657-1924825
(-)
cobalamin
1922910-1924458 (-)
lhv_1952
lhv_1952
Single gene
DOOR ID:
2179932
lhv_1952
View Structure
10
2064162-2064259
(+)
purine
2064344-2065649 (+)
lhv_2093
lhv_2093
Single gene
DOOR ID:
2179982
lhv_2093
View Structure
Genome:
Lactobacillus helveticus DPC 4571
(
NC_010080.1
);
Phylum:
Firmicutes
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"127004-127177";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"125284-126898";i:10;s:1:"-";i:11;s:8:"lhv_0123";i:12;s:43:"Amino acid ABC transporter permease protein";i:13;s:8:"lhv_0123";i:14;s:6:"Operon";i:15;s:6:"372546";i:16;s:17:"lhv_0122;lhv_0123";i:17;s:40:"nitrogen compound transport [GO:0071705]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"232404-232566";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"232651-235240";i:10;s:1:"+";i:11;s:8:"lhv_0228";i:12;s:33:"Cation transporting P-type ATPase";i:13;s:8:"lhv_0228";i:14;s:6:"Operon";i:15;s:6:"372568";i:16;s:50:"lhv_0228;lhv_0229;lhv_0230;lhv_0231;lhv_0232(ksgA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"259174-259271";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"258486-259065";i:10;s:1:"-";i:11;s:8:"lhv_0253";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:8:"lhv_0253";i:14;s:6:"Operon";i:15;s:6:"372572";i:16;s:17:"lhv_0252;lhv_0253";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"354573-354740";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"354780-357495";i:10;s:1:"+";i:11;s:8:"lhv_0360";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:8:"lhv_0360";i:14;s:11:"Single gene";i:15;s:7:"2179427";i:16;s:8:"lhv_0360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"892454-892629";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"892721-894038";i:10;s:1:"+";i:11;s:8:"lhv_0905";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:8:"lhv_0905";i:14;s:6:"Operon";i:15;s:6:"372665";i:16;s:62:"lhv_0905;lhv_0906;lhv_0907;lhv_0908;lhv_0909;lhv_0910;lhv_0911";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1035148-1035260";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1035341-1036031";i:10;s:1:"+";i:11;s:8:"lhv_1057";i:12;s:22:"Riboflavin transporter";i:13;s:8:"lhv_1057";i:14;s:11:"Single gene";i:15;s:7:"2179646";i:16;s:8:"lhv_1057";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1061364-1061422";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1061463-1061847";i:10;s:1:"+";i:11;s:8:"lhv_2500";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:8:"lhv_2500";i:14;s:6:"Operon";i:15;s:6:"372686";i:16;s:17:"lhv_2500;lhv_2501";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1692488-1692576";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1689811-1691272";i:10;s:1:"-";i:11;s:8:"lhv_1730";i:12;s:21:"Multidrug transporter";i:13;s:8:"lhv_1730";i:14;s:6:"Operon";i:15;s:6:"372775";i:16;s:17:"lhv_1730;lhv_1731";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1924657-1924825";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1922910-1924458";i:10;s:1:"-";i:11;s:8:"lhv_1952";i:12;s:0:"";i:13;s:8:"lhv_1952";i:14;s:11:"Single gene";i:15;s:7:"2179932";i:16;s:8:"lhv_1952";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010080.1";i:2;s:33:"Lactobacillus helveticus DPC 4571";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2064162-2064259";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2064344-2065649";i:10;s:1:"+";i:11;s:8:"lhv_2093";i:12;s:0:"";i:13;s:8:"lhv_2093";i:14;s:11:"Single gene";i:15;s:7:"2179982";i:16;s:8:"lhv_2093";i:17;s:0:"";i:18;s:15:"View Structure ";}}