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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
767592-767688
(+)
TPP
767719-768517 (+)
SARI_00752
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SARI_00752
Operon
DOOR ID:
371271
SARI_00752,
SARI_00753,
SARI_00754
View Structure
2
869401-869576
(+)
cobalamin
869672-871052 (+)
SARI_00853
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
SARI_00853
Operon
DOOR ID:
371285
SARI_00853,
SARI_00854
(cbiB)
,
SARI_00855
(cbiC)
,
SARI_00856
(cbiD)
,
SARI_00857,
SARI_00858,
SARI_00859,
SARI_00860,
SARI_00861,
SARI_00862,
SARI_00863,
SARI_00864,
SARI_00865,
SARI_00866,
SARI_00867,
SARI_00868
(cbiO)
,
SARI_00869,
SARI_00870
(cobU)
,
SARI_00871
(cobS)
,
SARI_00872
(cobT)
View Structure
3
1073072-1073173
(-)
yybP-ykoY
1072393-1073026 (-)
SARI_01106
Probable manganese efflux pump MntP
SARI_01106
Single gene
DOOR ID:
2176676
SARI_01106
View Structure
4
2056663-2056806
(-)
MOCO
2055151-2055664 (-)
SARI_02122
Molybdenum cofactor biosynthesis protein B
SARI_02122
Operon
DOOR ID:
371500
SARI_02118,
SARI_02119
(moaE)
,
SARI_02120
(moaD)
,
SARI_02121
(moaC)
,
SARI_02122,
SARI_02123
(moaA)
View Structure
5
2819543-2819642
(+)
TPP
2819673-2820657 (+)
tbpA
SARI_02897
Operon
DOOR ID:
371637
SARI_02897
(tbpA)
,
SARI_02898
(thiP)
,
SARI_02899
(thiQ)
View Structure
6
3108617-3108729
(-)
Mg sensor
3105811-3108520 (-)
SARI_03194
SARI_03194
Single gene
DOOR ID:
2177589
SARI_03194
View Structure
7
3192283-3192327
(-)
mini-ykkC
3191943-3192261 (-)
SARI_03295
SARI_03295
Single gene
DOOR ID:
2177634
SARI_03295
View Structure
8
3427443-3427543
(+)
TPP
3427629-3429525 (+)
SARI_03494
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SARI_03494
Operon
DOOR ID:
371748
SARI_03494,
SARI_03495,
SARI_03496,
SARI_03497,
SARI_03498
(thiG)
,
SARI_03499
(thiH)
View Structure
9
3464469-3464662
(-)
cobalamin
3462559-3464404 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SARI_03533
Operon
DOOR ID:
371752
SARI_03532,
SARI_03533
(btuB)
View Structure
10
4349797-4349997
(+)
FMN
4350102-4350756 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SARI_04433
Single gene
DOOR ID:
2178058
SARI_04433
(ribB)
View Structure
Genome:
Salmonella enterica subsp. arizonae serovar 62:z4
(
NC_010067.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"767592-767688";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"767719-768517";i:10;s:1:"+";i:11;s:10:"SARI_00752";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"SARI_00752";i:14;s:6:"Operon";i:15;s:6:"371271";i:16;s:32:"SARI_00752;SARI_00753;SARI_00754";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"869401-869576";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"869672-871052";i:10;s:1:"+";i:11;s:10:"SARI_00853";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:10:"SARI_00853";i:14;s:6:"Operon";i:15;s:6:"371285";i:16;s:261:"SARI_00853;SARI_00854(cbiB);SARI_00855(cbiC);SARI_00856(cbiD);SARI_00857;SARI_00858;SARI_00859;SARI_00860;SARI_00861;SARI_00862;SARI_00863;SARI_00864;SARI_00865;SARI_00866;SARI_00867;SARI_00868(cbiO);SARI_00869;SARI_00870(cobU);SARI_00871(cobS);SARI_00872(cobT)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1073072-1073173";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1072393-1073026";i:10;s:1:"-";i:11;s:10:"SARI_01106";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:10:"SARI_01106";i:14;s:11:"Single gene";i:15;s:7:"2176676";i:16;s:10:"SARI_01106";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2056663-2056806";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2055151-2055664";i:10;s:1:"-";i:11;s:10:"SARI_02122";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"SARI_02122";i:14;s:6:"Operon";i:15;s:6:"371500";i:16;s:89:"SARI_02118;SARI_02119(moaE);SARI_02120(moaD);SARI_02121(moaC);SARI_02122;SARI_02123(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2819543-2819642";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2819673-2820657";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"SARI_02897";i:14;s:6:"Operon";i:15;s:6:"371637";i:16;s:50:"SARI_02897(tbpA);SARI_02898(thiP);SARI_02899(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3108617-3108729";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"3105811-3108520";i:10;s:1:"-";i:11;s:10:"SARI_03194";i:12;s:0:"";i:13;s:10:"SARI_03194";i:14;s:11:"Single gene";i:15;s:7:"2177589";i:16;s:10:"SARI_03194";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3192283-3192327";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3191943-3192261";i:10;s:1:"-";i:11;s:10:"SARI_03295";i:12;s:0:"";i:13;s:10:"SARI_03295";i:14;s:11:"Single gene";i:15;s:7:"2177634";i:16;s:10:"SARI_03295";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3427443-3427543";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3427629-3429525";i:10;s:1:"+";i:11;s:10:"SARI_03494";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"SARI_03494";i:14;s:6:"Operon";i:15;s:6:"371748";i:16;s:77:"SARI_03494;SARI_03495;SARI_03496;SARI_03497;SARI_03498(thiG);SARI_03499(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3464469-3464662";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3462559-3464404";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"SARI_03533";i:14;s:6:"Operon";i:15;s:6:"371752";i:16;s:27:"SARI_03532;SARI_03533(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010067.1";i:2;s:49:"Salmonella enterica subsp. arizonae serovar 62:z4";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4349797-4349997";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4350102-4350756";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"SARI_04433";i:14;s:11:"Single gene";i:15;s:7:"2178058";i:16;s:16:"SARI_04433(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}