About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
6765-6869
(-)
TPP
5654-6632 (-)
Pmob_0008
ABC transporter; periplasmic binding protein; thiB subfamily
Pmob_0008
Operon
DOOR ID:
370715
Pmob_0007,
Pmob_0008
View Structure
2
34529-34694
(+)
cobalamin
34761-35640 (+)
Pmob_0038
Periplasmic binding protein
Pmob_0038
Operon
DOOR ID:
370722
Pmob_0038,
Pmob_0039,
Pmob_0040,
Pmob_0041
View Structure
3
408659-408780
(-)
MOCO
407529-408495 (-)
Pmob_0379
Uncharacterized solute-binding protein Pmob_0379
Pmob_0379
Operon
DOOR ID:
370799
Pmob_0370,
Pmob_0371,
Pmob_0372,
Pmob_0373,
Pmob_0374,
Pmob_0375,
Pmob_0376,
Pmob_0377,
Pmob_0378,
Pmob_0379
View Structure
4
1211465-1211576
(-)
SAM
1210475-1211303 (-)
Pmob_1131
Lipoprotein
Pmob_1131
Operon
DOOR ID:
370957
Pmob_1129,
Pmob_1130,
Pmob_1131
View Structure
5
1311045-1311224
(-)
lysine
1310000-1310972 (-)
Pmob_1226
Aspartate-semialdehyde dehydrogenase (1)
Pmob_1226
Operon
DOOR ID:
370982
Pmob_1225,
Pmob_1226
View Structure
6
2164445-2164546
(+)
purine
2164627-2165047 (+)
Pmob_1955
Phosphoribosylaminoimidazole carboxylase (1)
Pmob_1955
Operon
DOOR ID:
371117
Pmob_1955,
Pmob_1956,
Pmob_1957,
Pmob_1958,
Pmob_1959,
Pmob_1960
View Structure
Genome:
Petrotoga mobilis SJ95
(
NC_010003.1
);
Phylum:
Thermotogae
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:9:"6765-6869";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:9:"5654-6632";i:10;s:1:"-";i:11;s:9:"Pmob_0008";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Pmob_0008";i:14;s:6:"Operon";i:15;s:6:"370715";i:16;s:19:"Pmob_0007;Pmob_0008";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:11:"34529-34694";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"34761-35640";i:10;s:1:"+";i:11;s:9:"Pmob_0038";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Pmob_0038";i:14;s:6:"Operon";i:15;s:6:"370722";i:16;s:39:"Pmob_0038;Pmob_0039;Pmob_0040;Pmob_0041";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"408659-408780";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"407529-408495";i:10;s:1:"-";i:11;s:9:"Pmob_0379";i:12;s:48:"Uncharacterized solute-binding protein Pmob_0379";i:13;s:9:"Pmob_0379";i:14;s:6:"Operon";i:15;s:6:"370799";i:16;s:99:"Pmob_0370;Pmob_0371;Pmob_0372;Pmob_0373;Pmob_0374;Pmob_0375;Pmob_0376;Pmob_0377;Pmob_0378;Pmob_0379";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1211465-1211576";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1210475-1211303";i:10;s:1:"-";i:11;s:9:"Pmob_1131";i:12;s:11:"Lipoprotein";i:13;s:9:"Pmob_1131";i:14;s:6:"Operon";i:15;s:6:"370957";i:16;s:29:"Pmob_1129;Pmob_1130;Pmob_1131";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1311045-1311224";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1310000-1310972";i:10;s:1:"-";i:11;s:9:"Pmob_1226";i:12;s:40:"Aspartate-semialdehyde dehydrogenase (1)";i:13;s:9:"Pmob_1226";i:14;s:6:"Operon";i:15;s:6:"370982";i:16;s:19:"Pmob_1225;Pmob_1226";i:17;s:197:"isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010003.1";i:2;s:23:"Petrotoga mobilis SJ95 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"2164445-2164546";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2164627-2165047";i:10;s:1:"+";i:11;s:9:"Pmob_1955";i:12;s:44:"Phosphoribosylaminoimidazole carboxylase (1)";i:13;s:9:"Pmob_1955";i:14;s:6:"Operon";i:15;s:6:"371117";i:16;s:59:"Pmob_1955;Pmob_1956;Pmob_1957;Pmob_1958;Pmob_1959;Pmob_1960";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}}