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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
164367-164596
(-)
FMN
163523-164177 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Sbal195_0139
Single gene
DOOR ID:
2169301
Sbal195_0139
(ribB)
View Structure
2
327352-327485
(+)
MOCO
328548-329025 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Sbal195_0286
Operon
DOOR ID:
369197
Sbal195_0285
(moaA)
,
Sbal195_0286
(moaC)
View Structure
3
1024541-1024669
(+)
glycine
1024919-1026278 (+)
Sbal195_0869
Amino acid carrier protein
Sbal195_0869
Single gene
DOOR ID:
2169629
Sbal195_0869
View Structure
4
1203831-1203997
(+)
cobalamin
1204096-1204990 (+)
Sbal195_1009
ABC transporter related
Sbal195_1009
Operon
DOOR ID:
369312
Sbal195_1009,
Sbal195_1010
View Structure
5
2204901-2205026
(+)
TPP
2205080-2207312 (+)
Sbal195_1841
TonB-dependent receptor
Sbal195_1841
Single gene
DOOR ID:
2170167
Sbal195_1841
View Structure
6
2886094-2886192
(-)
TPP
2883768-2885892 (-)
Sbal195_2439
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Sbal195_2439
Operon
DOOR ID:
369558
Sbal195_2434
(thiH)
,
Sbal195_2435
(thiG)
,
Sbal195_2436,
Sbal195_2437,
Sbal195_2438,
Sbal195_2439
View Structure
7
3527749-3527797
(-)
mini-ykkC
3527418-3527733 (-)
Sbal195_2970
Sbal195_2970
Single gene
DOOR ID:
2170699
Sbal195_2970
View Structure
8
3559844-3560040
(-)
lysine
3558195-3559764 (-)
Sbal195_2993
Na+/H+ antiporter NhaC
Sbal195_2993
Single gene
DOOR ID:
2170713
Sbal195_2993
View Structure
9
3806574-3806662
(-)
c-di-GMP-I
3803852-3806459 (-)
Sbal195_3236
Glycoside hydrolase family 18
Sbal195_3236
single gene
DOOR ID:
2170799
Sbal195_3236
View Structure
10
4224527-4224626
(-)
c-di-GMP-I
4222958-4224404 (-)
Sbal195_3589
GlcNAc-binding protein A
Sbal195_3589
single gene
DOOR ID:
2170967
Sbal195_3589
View Structure
11
4224851-4224954
(+)
yybP-ykoY
4225037-4225592 (+)
Sbal195_3590
Sbal195_3590
Single gene
DOOR ID:
2170968
Sbal195_3590
View Structure
12
4441176-4441409
(-)
cobalamin
4439105-4441067 (-)
Sbal195_3767
TonB-dependent siderophore receptor
Sbal195_3767
Single gene
DOOR ID:
2171076
Sbal195_3767
View Structure
13
4522782-4522956
(-)
lysine
4521275-4522631 (-)
Sbal195_3840
Aspartokinase
Sbal195_3840
Operon
DOOR ID:
369799
Sbal195_3839,
Sbal195_3840
View Structure
Genome:
Shewanella baltica OS195
(
NC_009997.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3527749-3527797";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3527418-3527733";i:10;s:1:"-";i:11;s:12:"Sbal195_2970";i:12;s:0:"";i:13;s:12:"Sbal195_2970";i:14;s:11:"Single gene";i:15;s:7:"2170699";i:16;s:12:"Sbal195_2970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3559844-3560040";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3558195-3559764";i:10;s:1:"-";i:11;s:12:"Sbal195_2993";i:12;s:22:"Na+/H+ antiporter NhaC";i:13;s:12:"Sbal195_2993";i:14;s:11:"Single gene";i:15;s:7:"2170713";i:16;s:12:"Sbal195_2993";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3806574-3806662";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"3803852-3806459";i:10;s:1:"-";i:11;s:12:"Sbal195_3236";i:12;s:29:"Glycoside hydrolase family 18";i:13;s:12:"Sbal195_3236";i:14;s:11:"single gene";i:15;s:7:"2170799";i:16;s:12:"Sbal195_3236";i:17;s:82:"carbohydrate metabolic process [GO:0005975]; chitin catabolic process [GO:0006032]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4224527-4224626";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4222958-4224404";i:10;s:1:"-";i:11;s:12:"Sbal195_3589";i:12;s:24:"GlcNAc-binding protein A";i:13;s:12:"Sbal195_3589";i:14;s:11:"single gene";i:15;s:7:"2170967";i:16;s:12:"Sbal195_3589";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4224851-4224954";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4225037-4225592";i:10;s:1:"+";i:11;s:12:"Sbal195_3590";i:12;s:0:"";i:13;s:12:"Sbal195_3590";i:14;s:11:"Single gene";i:15;s:7:"2170968";i:16;s:12:"Sbal195_3590";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4441176-4441409";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4439105-4441067";i:10;s:1:"-";i:11;s:12:"Sbal195_3767";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:12:"Sbal195_3767";i:14;s:11:"Single gene";i:15;s:7:"2171076";i:16;s:12:"Sbal195_3767";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009997.1";i:2;s:25:"Shewanella baltica OS195 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4522782-4522956";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4521275-4522631";i:10;s:1:"-";i:11;s:12:"Sbal195_3840";i:12;s:14:"Aspartokinase ";i:13;s:12:"Sbal195_3840";i:14;s:6:"Operon";i:15;s:6:"369799";i:16;s:25:"Sbal195_3839;Sbal195_3840";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
