About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
19598-19718
(+)
yybP-ykoY
19805-20792 (+)
Haur_0016
Integral membrane protein TerC
Haur_0016
Single gene
DOOR ID:
2165413
Haur_0016
View Structure
2
306230-306332
(+)
TPP
306390-307551 (+)
Haur_0261
ABC transporter; periplasmic binding protein; thiB subfamily
Haur_0261
Single gene
DOOR ID:
2165512
Haur_0261
View Structure
3
1061086-1061193
(+)
SAM
1061342-1062623 (+)
Haur_0927
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Haur_0927
Single gene
DOOR ID:
2165779
Haur_0927
View Structure
4
1213304-1213448
(-)
cobalamin
1212136-1213168 (-)
Haur_1060
Cob(I)alamin adenosyltransferase (7)
Haur_1060
Operon
DOOR ID:
367559
Haur_1057,
Haur_1058,
Haur_1059,
Haur_1060
View Structure
5
1834613-1834747
(+)
FMN
1834898-1835723 (+)
Haur_1578
Binding-protein-dependent transport systems inner membrane component
Haur_1578
Operon
DOOR ID:
367650
Haur_1578,
Haur_1579,
Haur_1580
View Structure
6
1982649-1982744
(+)
yybP-ykoY
1982830-1983793 (+)
Haur_1705
Integral membrane protein TerC
Haur_1705
Single gene
DOOR ID:
2166128
Haur_1705
View Structure
7
2036959-2037071
(-)
SAM
2036186-2036891 (-)
Haur_1749
Phosphoadenylyl-sulfate reductase (thioredoxin)
Haur_1749
Operon
DOOR ID:
367683
Haur_1748,
Haur_1749
View Structure
8
2997482-2997580
(+)
SAM
2997619-2998696 (+)
Haur_2349
Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)
Haur_2349
Operon
DOOR ID:
367795
Haur_2349,
Haur_2350
View Structure
9
3266762-3266864
(+)
SAM
3266965-3270508 (+)
Haur_2544
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Haur_2544
Single gene
DOOR ID:
2166512
Haur_2544
View Structure
10
3303411-3303548
(-)
cobalamin
3300849-3303270 (-)
Haur_2575
Ribonucleoside-diphosphate reductase
Haur_2575
Operon
DOOR ID:
367830
Haur_2573,
Haur_2574,
Haur_2575
View Structure
11
3502228-3502313
(-)
ZMP-ZTP
3500667-3502188 (-)
Haur_2746
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Haur_2746
Operon
DOOR ID:
367864
Haur_2740,
Haur_2741,
Haur_2742,
Haur_2743,
Haur_2744,
Haur_2745,
Haur_2746
View Structure
12
3638316-3638407
(+)
glycine
3638450-3639236 (+)
Haur_2867
Biotin/lipoate A/B protein ligase
Haur_2867
Operon
DOOR ID:
367893
Haur_2867,
Haur_2868,
Haur_2869
View Structure
13
4780847-4780972
(+)
cobalamin
4781060-4782161 (+)
Haur_3809
Haur_3809
Single gene
DOOR ID:
2167066
Haur_3809
View Structure
14
4951144-4951417
(+)
glmS
4951523-4953368 (+)
Haur_3948
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Haur_3948
Single gene
DOOR ID:
2167130
Haur_3948
View Structure
Genome:
Herpetosiphon aurantiacus DSM 785
(
NC_009972.1
);
Phylum:
Chloroflexi
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:11:"19598-19718";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:11:"19805-20792";i:10;s:1:"+";i:11;s:9:"Haur_0016";i:12;s:30:"Integral membrane protein TerC";i:13;s:9:"Haur_0016";i:14;s:11:"Single gene";i:15;s:7:"2165413";i:16;s:9:"Haur_0016";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"306230-306332";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"306390-307551";i:10;s:1:"+";i:11;s:9:"Haur_0261";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Haur_0261";i:14;s:11:"Single gene";i:15;s:7:"2165512";i:16;s:9:"Haur_0261";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1061086-1061193";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1061342-1062623";i:10;s:1:"+";i:11;s:9:"Haur_0927";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Haur_0927";i:14;s:11:"Single gene";i:15;s:7:"2165779";i:16;s:9:"Haur_0927";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1213304-1213448";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1212136-1213168";i:10;s:1:"-";i:11;s:9:"Haur_1060";i:12;s:36:"Cob(I)alamin adenosyltransferase (7)";i:13;s:9:"Haur_1060";i:14;s:6:"Operon";i:15;s:6:"367559";i:16;s:39:"Haur_1057;Haur_1058;Haur_1059;Haur_1060";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1834613-1834747";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1834898-1835723";i:10;s:1:"+";i:11;s:9:"Haur_1578";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Haur_1578";i:14;s:6:"Operon";i:15;s:6:"367650";i:16;s:29:"Haur_1578;Haur_1579;Haur_1580";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1982649-1982744";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1982830-1983793";i:10;s:1:"+";i:11;s:9:"Haur_1705";i:12;s:30:"Integral membrane protein TerC";i:13;s:9:"Haur_1705";i:14;s:11:"Single gene";i:15;s:7:"2166128";i:16;s:9:"Haur_1705";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2036959-2037071";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2036186-2036891";i:10;s:1:"-";i:11;s:9:"Haur_1749";i:12;s:48:"Phosphoadenylyl-sulfate reductase (thioredoxin) ";i:13;s:9:"Haur_1749";i:14;s:6:"Operon";i:15;s:6:"367683";i:16;s:19:"Haur_1748;Haur_1749";i:17;s:171:"hydrogen sulfide biosynthetic process [GO:0070814]; sulfate assimilation; phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [GO:0019379]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2997482-2997580";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2997619-2998696";i:10;s:1:"+";i:11;s:9:"Haur_2349";i:12;s:115:"Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)";i:13;s:9:"Haur_2349";i:14;s:6:"Operon";i:15;s:6:"367795";i:16;s:19:"Haur_2349;Haur_2350";i:17;s:58:"L-methionine salvage from methylthioadenosine [GO:0019509]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3266762-3266864";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3266965-3270508";i:10;s:1:"+";i:11;s:9:"Haur_2544";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Haur_2544";i:14;s:11:"Single gene";i:15;s:7:"2166512";i:16;s:9:"Haur_2544";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3303411-3303548";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3300849-3303270";i:10;s:1:"-";i:11;s:9:"Haur_2575";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Haur_2575";i:14;s:6:"Operon";i:15;s:6:"367830";i:16;s:29:"Haur_2573;Haur_2574;Haur_2575";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3502228-3502313";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3500667-3502188";i:10;s:1:"-";i:11;s:9:"Haur_2746";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Haur_2746";i:14;s:6:"Operon";i:15;s:6:"367864";i:16;s:69:"Haur_2740;Haur_2741;Haur_2742;Haur_2743;Haur_2744;Haur_2745;Haur_2746";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3638316-3638407";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3638450-3639236";i:10;s:1:"+";i:11;s:9:"Haur_2867";i:12;s:33:"Biotin/lipoate A/B protein ligase";i:13;s:9:"Haur_2867";i:14;s:6:"Operon";i:15;s:6:"367893";i:16;s:29:"Haur_2867;Haur_2868;Haur_2869";i:17;s:50:"cellular protein modification process [GO:0006464]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4780847-4780972";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4781060-4782161";i:10;s:1:"+";i:11;s:9:"Haur_3809";i:12;s:0:"";i:13;s:9:"Haur_3809";i:14;s:11:"Single gene";i:15;s:7:"2167066";i:16;s:9:"Haur_3809";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009972.1";i:2;s:34:"Herpetosiphon aurantiacus DSM 785 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4951144-4951417";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"4951523-4953368";i:10;s:1:"+";i:11;s:9:"Haur_3948";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Haur_3948";i:14;s:11:"Single gene";i:15;s:7:"2167130";i:16;s:9:"Haur_3948";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}}