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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78653-78732
(+)
ZMP-ZTP
78755-79595 (+)
Sare_0067
Bifunctional protein FolD 1 [Includes: Methylenetetrahydrofolate dehydrogenase ]
Sare_0067
Single gene
DOOR ID:
2162152
Sare_0067
View Structure
2
338476-338608
(+)
SAM
338619-339906 (+)
Sare_0305
Threonine synthase
Sare_0305
Single gene
DOOR ID:
2162260
Sare_0305
View Structure
3
357435-357554
(-)
SAM-IV
356141-357386 (-)
Sare_0318
Cysteine desulfurase
Sare_0318
Single gene
DOOR ID:
2162271
Sare_0318
View Structure
4
603110-603238
(-)
ydaO-yuaA
602089-603106 (-)
Sare_0531
Sare_0531
Single gene
DOOR ID:
2162360
Sare_0531
View Structure
5
1933321-1933455
(+)
ydaO-yuaA
1933692-1934553 (+)
Sare_1677
Sare_1677
Single gene
DOOR ID:
2162843
Sare_1677
View Structure
6
2154051-2154223
(+)
FMN
2154381-2155443 (+)
Sare_1867
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Sare_1867
Operon
DOOR ID:
366220
Sare_1867,
Sare_1868,
Sare_1869,
Sare_1870,
Sare_1871
(ribH)
,
Sare_1872
(hisE)
,
Sare_1873
(hisG)
View Structure
7
2571207-2571296
(-)
ZMP-ZTP
2569734-2571171 (-)
Sare_2234
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Sare_2234
Single gene
DOOR ID:
2163053
Sare_2234
View Structure
8
2875684-2875783
(-)
glycine
2872788-2875608 (-)
Sare_2515
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Sare_2515
Single gene
DOOR ID:
2163200
Sare_2515
View Structure
9
3088855-3088984
(-)
cobalamin
3084907-3088576 (-)
cobN
Cobaltochelatase; CobN subunit
Sare_2710
Operon
DOOR ID:
366361
Sare_2699,
Sare_2700,
Sare_2701,
Sare_2702,
Sare_2703,
Sare_2704
(cbiD)
,
Sare_2705,
Sare_2706,
Sare_2707,
Sare_2708,
Sare_2709,
Sare_2710
(cobN)
View Structure
10
3173839-3174011
(-)
cobalamin
3173129-3173810 (-)
Sare_2793
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Sare_2793
Operon
DOOR ID:
366378
Sare_2790,
Sare_2791,
Sare_2792,
Sare_2793
View Structure
11
4190713-4190844
(+)
ydaO-yuaA
4190889-4191933 (+)
Sare_3632
Sare_3632
Single gene
DOOR ID:
2163646
Sare_3632
View Structure
12
4352961-4353066
(+)
TPP
4353141-4353732 (+)
Sare_3821
Sare_3821
Single gene
DOOR ID:
2163707
Sare_3821
View Structure
13
4856315-4856423
(-)
TPP
4854503-4855700 (-)
Sare_4279
Glycine oxidase ThiO
Sare_4279
Operon
DOOR ID:
366665
Sare_4274,
Sare_4275,
Sare_4276,
Sare_4277,
Sare_4278,
Sare_4279,
Sare_4280
View Structure
14
5088819-5088964
(-)
cobalamin
5087798-5088737 (-)
Sare_4501
Periplasmic binding protein
Sare_4501
Operon
DOOR ID:
366702
Sare_4499,
Sare_4500,
Sare_4501
View Structure
15
5530984-5531130
(-)
cobalamin
5528365-5530831 (-)
Sare_4877
Ribonucleoside-diphosphate reductase
Sare_4877
Operon
DOOR ID:
366769
Sare_4873,
Sare_4874,
Sare_4875,
Sare_4876,
Sare_4877
View Structure
Genome:
Salinispora arenicola CNS-205
(
NC_009953.1
);
Phylum:
Actinobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"78653-78732";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:11:"78755-79595";i:10;s:1:"+";i:11;s:9:"Sare_0067";i:12;s:80:"Bifunctional protein FolD 1 [Includes: Methylenetetrahydrofolate dehydrogenase ]";i:13;s:9:"Sare_0067";i:14;s:11:"Single gene";i:15;s:7:"2162152";i:16;s:9:"Sare_0067";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"338476-338608";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"338619-339906";i:10;s:1:"+";i:11;s:9:"Sare_0305";i:12;s:18:"Threonine synthase";i:13;s:9:"Sare_0305";i:14;s:11:"Single gene";i:15;s:7:"2162260";i:16;s:9:"Sare_0305";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"357435-357554";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"356141-357386";i:10;s:1:"-";i:11;s:9:"Sare_0318";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Sare_0318";i:14;s:11:"Single gene";i:15;s:7:"2162271";i:16;s:9:"Sare_0318";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"603110-603238";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"602089-603106";i:10;s:1:"-";i:11;s:9:"Sare_0531";i:12;s:0:"";i:13;s:9:"Sare_0531";i:14;s:11:"Single gene";i:15;s:7:"2162360";i:16;s:9:"Sare_0531";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1933321-1933455";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1933692-1934553";i:10;s:1:"+";i:11;s:9:"Sare_1677";i:12;s:0:"";i:13;s:9:"Sare_1677";i:14;s:11:"Single gene";i:15;s:7:"2162843";i:16;s:9:"Sare_1677";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2154051-2154223";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2154381-2155443";i:10;s:1:"+";i:11;s:9:"Sare_1867";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Sare_1867";i:14;s:6:"Operon";i:15;s:6:"366220";i:16;s:87:"Sare_1867;Sare_1868;Sare_1869;Sare_1870;Sare_1871(ribH);Sare_1872(hisE);Sare_1873(hisG)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2571207-2571296";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2569734-2571171";i:10;s:1:"-";i:11;s:9:"Sare_2234";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Sare_2234";i:14;s:11:"Single gene";i:15;s:7:"2163053";i:16;s:9:"Sare_2234";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2875684-2875783";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2872788-2875608";i:10;s:1:"-";i:11;s:9:"Sare_2515";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Sare_2515";i:14;s:11:"Single gene";i:15;s:7:"2163200";i:16;s:9:"Sare_2515";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3088855-3088984";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3084907-3088576";i:10;s:1:"-";i:11;s:4:"cobN";i:12;s:31:"Cobaltochelatase; CobN subunit ";i:13;s:9:"Sare_2710";i:14;s:6:"Operon";i:15;s:6:"366361";i:16;s:131:"Sare_2699;Sare_2700;Sare_2701;Sare_2702;Sare_2703;Sare_2704(cbiD);Sare_2705;Sare_2706;Sare_2707;Sare_2708;Sare_2709;Sare_2710(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3173839-3174011";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3173129-3173810";i:10;s:1:"-";i:11;s:9:"Sare_2793";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:9:"Sare_2793";i:14;s:6:"Operon";i:15;s:6:"366378";i:16;s:39:"Sare_2790;Sare_2791;Sare_2792;Sare_2793";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4190713-4190844";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4190889-4191933";i:10;s:1:"+";i:11;s:9:"Sare_3632";i:12;s:0:"";i:13;s:9:"Sare_3632";i:14;s:11:"Single gene";i:15;s:7:"2163646";i:16;s:9:"Sare_3632";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4352961-4353066";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4353141-4353732";i:10;s:1:"+";i:11;s:9:"Sare_3821";i:12;s:0:"";i:13;s:9:"Sare_3821";i:14;s:11:"Single gene";i:15;s:7:"2163707";i:16;s:9:"Sare_3821";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4856315-4856423";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4854503-4855700";i:10;s:1:"-";i:11;s:9:"Sare_4279";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Sare_4279";i:14;s:6:"Operon";i:15;s:6:"366665";i:16;s:69:"Sare_4274;Sare_4275;Sare_4276;Sare_4277;Sare_4278;Sare_4279;Sare_4280";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5088819-5088964";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5087798-5088737";i:10;s:1:"-";i:11;s:9:"Sare_4501";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Sare_4501";i:14;s:6:"Operon";i:15;s:6:"366702";i:16;s:29:"Sare_4499;Sare_4500;Sare_4501";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009953.1";i:2;s:30:"Salinispora arenicola CNS-205 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5530984-5531130";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5528365-5530831";i:10;s:1:"-";i:11;s:9:"Sare_4877";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"Sare_4877";i:14;s:6:"Operon";i:15;s:6:"366769";i:16;s:49:"Sare_4873;Sare_4874;Sare_4875;Sare_4876;Sare_4877";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}}