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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
782837-782941
(+)
SAH
783120-783549 (-)
Dole_0656
Peptidyl-prolyl cis-trans isomerase
Dole_0656
Single gene
DOOR ID:
2159908
Dole_0656
View Structure
2
2080979-2081056
(+)
c-di-GMP-I
2081142-2083383 (+)
Dole_1733
Uncharacterized protein
Dole_1733
single gene
DOOR ID:
2160304
Dole_1733
View Structure
3
2088664-2088850
(-)
cobalamin
2086820-2088551 (-)
Dole_1738
MotA/TolQ/ExbB proton channel
Dole_1738
Operon
DOOR ID:
364739
Dole_1737,
Dole_1738
View Structure
4
2146004-2146128
(+)
SAH
2146927-2147614 (+)
Dole_1781
Glycerophosphoryl diester phosphodiesterase
Dole_1781
Operon
DOOR ID:
364748
Dole_1780,
Dole_1781
View Structure
5
2248438-2248627
(+)
cobalamin
2248751-2249012 (+)
Dole_1858
Dole_1858
Operon
DOOR ID:
364766
Dole_1858,
Dole_1859
View Structure
6
2287327-2287442
(-)
SAH
2283713-2287262 (-)
Dole_1885
DNA-directed DNA polymerase
Dole_1885
Operon
DOOR ID:
364771
Dole_1884,
Dole_1885
View Structure
7
2517001-2517194
(+)
cobalamin
2517237-2518368 (+)
Dole_2065
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Dole_2065
Single gene
DOOR ID:
2160453
Dole_2065
View Structure
8
2932039-2932133
(-)
TPP
2930645-2931926 (-)
Dole_2427
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dole_2427
Single gene
DOOR ID:
2160593
Dole_2427
View Structure
9
3573766-3573832
(+)
fluoride
3574302-3574704 (+)
Dole_2979
Putative fluoride ion transporter CrcB
Dole_2979
Single gene
DOOR ID:
2160836
Dole_2979
View Structure
Genome:
Desulfococcus oleovorans Hxd3
(
NC_009943.1
);
Phylum:
delta/epsilon subdivisions
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