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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
177974-178168
(-)
cobalamin
177196-177853 (-)
AZC_0148
AZC_0148
Single gene
DOOR ID:
2157947
AZC_0148
View Structure
2
1750641-1750716
(-)
cobalamin
1750364-1750526 (-)
AZC_1537
AZC_1537
Single gene
DOOR ID:
2158509
AZC_1537
View Structure
3
2089229-2089334
(+)
TPP
2089373-2090198 (+)
AZC_1826
Phosphomethylpyrimidine kinase
AZC_1826
Operon
DOOR ID:
363690
AZC_1826,
AZC_1827
View Structure
4
2395884-2395971
(-)
glycine
2394032-2395868 (-)
AZC_2080
ABC transporter substrate binding protein
AZC_2080
Operon
DOOR ID:
363742
AZC_2074,
AZC_2075,
AZC_2076,
AZC_2077,
AZC_2078,
AZC_2079,
AZC_2080
View Structure
5
2941928-2942063
(+)
TPP
2942173-2944030 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
AZC_2607
Single gene
DOOR ID:
2158823
AZC_2607
(thiC)
View Structure
6
3062960-3063186
(+)
cobalamin
3063722-3065882 (+)
AZC_2702
TonB-dependent siderophore receptor
AZC_2702
Operon
DOOR ID:
363876
AZC_2702,
AZC_2703,
AZC_2704
View Structure
7
4082894-4082993
(-)
TPP
4081419-4081626 (-)
thiS
Thiamine-biosynthesis
AZC_3553
Operon
DOOR ID:
364062
AZC_3552
(thiG)
,
AZC_3553
(thiS)
View Structure
8
4495829-4496068
(+)
cobalamin
4496139-4496550 (+)
AZC_3933
Putative metal-binding protein
AZC_3933
Operon
DOOR ID:
364127
AZC_3933,
AZC_3934
(cobW)
,
AZC_3935
(cobN)
View Structure
9
4590607-4590686
(+)
sam-alpha
4590738-4591941 (+)
AZC_4021
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
AZC_4021
Single gene
DOOR ID:
2159325
AZC_4021
View Structure
10
4837046-4837148
(+)
glycine
4837364-4838528 (+)
AZC_4245
Glycine cleavage system T protein
AZC_4245
Operon
DOOR ID:
364196
AZC_4245,
AZC_4246,
AZC_4247,
AZC_4248
View Structure
11
4992010-4992119
(+)
ykkC-yxkD
4992123-4993299 (+)
AZC_4397
Putative taurine transport system protein
AZC_4397
Single gene
DOOR ID:
2159473
AZC_4397
View Structure
12
4995250-4995299
(+)
mini-ykkC
4995326-4996157 (+)
AZC_4400
AZC_4400
Operon
DOOR ID:
364232
AZC_4398
(tauC)
,
AZC_4399,
AZC_4400,
AZC_4401,
AZC_4402,
AZC_4403
View Structure
Genome:
Azorhizobium caulinodans ORS 571
(
NC_009937.1
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3062960-3063186";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3063722-3065882";i:10;s:1:"+";i:11;s:8:"AZC_2702";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:8:"AZC_2702";i:14;s:6:"Operon";i:15;s:6:"363876";i:16;s:26:"AZC_2702;AZC_2703;AZC_2704";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4082894-4082993";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4081419-4081626";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:21:"Thiamine-biosynthesis";i:13;s:8:"AZC_3553";i:14;s:6:"Operon";i:15;s:6:"364062";i:16;s:29:"AZC_3552(thiG);AZC_3553(thiS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4495829-4496068";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4496139-4496550";i:10;s:1:"+";i:11;s:8:"AZC_3933";i:12;s:30:"Putative metal-binding protein";i:13;s:8:"AZC_3933";i:14;s:6:"Operon";i:15;s:6:"364127";i:16;s:38:"AZC_3933;AZC_3934(cobW);AZC_3935(cobN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4590607-4590686";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4590738-4591941";i:10;s:1:"+";i:11;s:8:"AZC_4021";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"AZC_4021";i:14;s:11:"Single gene";i:15;s:7:"2159325";i:16;s:8:"AZC_4021";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4837046-4837148";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4837364-4838528";i:10;s:1:"+";i:11;s:8:"AZC_4245";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"AZC_4245";i:14;s:6:"Operon";i:15;s:6:"364196";i:16;s:35:"AZC_4245;AZC_4246;AZC_4247;AZC_4248";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4992010-4992119";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"4992123-4993299";i:10;s:1:"+";i:11;s:8:"AZC_4397";i:12;s:41:"Putative taurine transport system protein";i:13;s:8:"AZC_4397";i:14;s:11:"Single gene";i:15;s:7:"2159473";i:16;s:8:"AZC_4397";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009937.1";i:2;s:33:"Azorhizobium caulinodans ORS 571 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4995250-4995299";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4995326-4996157";i:10;s:1:"+";i:11;s:8:"AZC_4400";i:12;s:0:"";i:13;s:8:"AZC_4400";i:14;s:6:"Operon";i:15;s:6:"364232";i:16;s:59:"AZC_4398(tauC);AZC_4399;AZC_4400;AZC_4401;AZC_4402;AZC_4403";i:17;s:0:"";i:18;s:15:"View Structure ";}}