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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
215091-215210
(-)
SAM
213805-215083 (-)
Franean1_0176
Threonine synthase
Franean1_0176
Single gene
DOOR ID:
2148513
Franean1_0176
View Structure
2
260778-260975
(-)
ydaO-yuaA
260032-260776 (-)
Franean1_0213
Transglycosylase domain protein
Franean1_0213
Single gene
DOOR ID:
2148534
Franean1_0213
View Structure
3
262863-263110
(-)
ydaO-yuaA
262172-262856 (-)
Franean1_0215
Transglycosylase domain protein
Franean1_0215
Single gene
DOOR ID:
2148536
Franean1_0215
View Structure
4
751144-751238
(+)
glycine
751442-754685 (+)
Franean1_0647
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Franean1_0647
Single gene
DOOR ID:
2148745
Franean1_0647
View Structure
5
751242-751355
(+)
glycine
751442-754685 (+)
Franean1_0647
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Franean1_0647
Single gene
DOOR ID:
2148745
Franean1_0647
View Structure
6
1963250-1963326
(-)
SAH
1959444-1963233 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Franean1_1643
Single gene
DOOR ID:
2149265
Franean1_1643
(metH)
View Structure
7
2059370-2059500
(+)
FMN
2059625-2060309 (+)
Franean1_1723
Riboflavin synthase; alpha subunit
Franean1_1723
Operon
DOOR ID:
360266
Franean1_1723,
Franean1_1724,
Franean1_1725
(ribH)
View Structure
8
2205137-2205250
(+)
TPP
2206155-2207322 (+)
thiH
Thiazole biosynthesis protein ThiH
Franean1_1837
Operon
DOOR ID:
360291
Franean1_1836
(thiG)
,
Franean1_1837
(thiH)
View Structure
9
2985789-2986002
(-)
ydaO-yuaA
2984742-2985513 (-)
Franean1_2508
Peptidoglycan-binding domain 1 protein
Franean1_2508
Single gene
DOOR ID:
2149673
Franean1_2508
View Structure
10
2987614-2987702
(-)
ZMP-ZTP
2986320-2987583 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Franean1_2509
Single gene
DOOR ID:
2149674
Franean1_2509
(glyA)
View Structure
11
4197847-4197991
(-)
cobalamin
4197106-4197562 (-)
Franean1_3538
Fe uptake system permease
Franean1_3538
Single gene
DOOR ID:
2150181
Franean1_3538
View Structure
12
4201037-4201247
(-)
cobalamin
4198543-4200844 (-)
Franean1_3540
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Franean1_3540
Operon
DOOR ID:
360587
Franean1_3539,
Franean1_3540
View Structure
13
4201376-4201591
(+)
cobalamin
4201625-4202822 (+)
Franean1_3541
Periplasmic binding protein
Franean1_3541
Operon
DOOR ID:
360588
Franean1_3541,
Franean1_3542,
Franean1_3543,
Franean1_3544,
Franean1_3545
View Structure
14
4938454-4938582
(+)
cobalamin
4938709-4941040 (+)
Franean1_4158
Magnesium chelatase
Franean1_4158
Operon
DOOR ID:
360694
Franean1_4158,
Franean1_4159,
Franean1_4160,
Franean1_4161,
Franean1_4162,
Franean1_4163
View Structure
15
5838831-5838906
(-)
cobalamin
5838534-5838777 (-)
Franean1_4866
Franean1_4866
Operon
DOOR ID:
360825
Franean1_4862
(cobN)
,
Franean1_4863,
Franean1_4864
(cobD)
,
Franean1_4865,
Franean1_4866
View Structure
16
5910498-5910611
(-)
SAM-IV
5908904-5910461 (-)
Franean1_4922
Cysteine desulfurase
Franean1_4922
Single gene
DOOR ID:
2150834
Franean1_4922
View Structure
17
6805021-6805140
(+)
TPP
6807011-6808853 (-)
Franean1_5610
Methyltransferase type 12
Franean1_5610
Single gene
DOOR ID:
2151213
Franean1_5610
View Structure
18
6974725-6974887
(-)
ydaO-yuaA
6973618-6974722 (-)
Franean1_5739
NLP/P60 protein
Franean1_5739
Single gene
DOOR ID:
2151272
Franean1_5739
View Structure
19
7938173-7938379
(+)
ydaO-yuaA
7940547-7941216 (-)
Franean1_6529
Franean1_6529
Single gene
DOOR ID:
2151643
Franean1_6529
View Structure
20
8014704-8014880
(-)
ydaO-yuaA
8014313-8014700 (-)
Franean1_6585
Transglycosylase domain protein
Franean1_6585
Single gene
DOOR ID:
2151667
Franean1_6585
View Structure
Genome:
Frankia sp. EAN1pec
(
NC_009921.1
);
Phylum:
Actinobacteria
a:21:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"215091-215210";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"213805-215083";i:10;s:1:"-";i:11;s:13:"Franean1_0176";i:12;s:18:"Threonine synthase";i:13;s:13:"Franean1_0176";i:14;s:11:"Single gene";i:15;s:7:"2148513";i:16;s:13:"Franean1_0176";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"260778-260975";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"260032-260776";i:10;s:1:"-";i:11;s:13:"Franean1_0213";i:12;s:31:"Transglycosylase domain protein";i:13;s:13:"Franean1_0213";i:14;s:11:"Single gene";i:15;s:7:"2148534";i:16;s:13:"Franean1_0213";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"262863-263110";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"262172-262856";i:10;s:1:"-";i:11;s:13:"Franean1_0215";i:12;s:31:"Transglycosylase domain protein";i:13;s:13:"Franean1_0215";i:14;s:11:"Single gene";i:15;s:7:"2148536";i:16;s:13:"Franean1_0215";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"751144-751238";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"751442-754685";i:10;s:1:"+";i:11;s:13:"Franean1_0647";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:13:"Franean1_0647";i:14;s:11:"Single gene";i:15;s:7:"2148745";i:16;s:13:"Franean1_0647";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"751242-751355";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"751442-754685";i:10;s:1:"+";i:11;s:13:"Franean1_0647";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:13:"Franean1_0647";i:14;s:11:"Single gene";i:15;s:7:"2148745";i:16;s:13:"Franean1_0647";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1963250-1963326";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1959444-1963233";i:10;s:1:"-";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:13:"Franean1_1643";i:14;s:11:"Single gene";i:15;s:7:"2149265";i:16;s:19:"Franean1_1643(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2059370-2059500";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2059625-2060309";i:10;s:1:"+";i:11;s:13:"Franean1_1723";i:12;s:34:"Riboflavin synthase; alpha subunit";i:13;s:13:"Franean1_1723";i:14;s:6:"Operon";i:15;s:6:"360266";i:16;s:47:"Franean1_1723;Franean1_1724;Franean1_1725(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2205137-2205250";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2206155-2207322";i:10;s:1:"+";i:11;s:4:"thiH";i:12;s:34:"Thiazole biosynthesis protein ThiH";i:13;s:13:"Franean1_1837";i:14;s:6:"Operon";i:15;s:6:"360291";i:16;s:39:"Franean1_1836(thiG);Franean1_1837(thiH)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2985789-2986002";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2984742-2985513";i:10;s:1:"-";i:11;s:13:"Franean1_2508";i:12;s:38:"Peptidoglycan-binding domain 1 protein";i:13;s:13:"Franean1_2508";i:14;s:11:"Single gene";i:15;s:7:"2149673";i:16;s:13:"Franean1_2508";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2987614-2987702";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2986320-2987583";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:13:"Franean1_2509";i:14;s:11:"Single gene";i:15;s:7:"2149674";i:16;s:19:"Franean1_2509(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4197847-4197991";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4197106-4197562";i:10;s:1:"-";i:11;s:13:"Franean1_3538";i:12;s:25:"Fe uptake system permease";i:13;s:13:"Franean1_3538";i:14;s:11:"Single gene";i:15;s:7:"2150181";i:16;s:13:"Franean1_3538";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4201037-4201247";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4198543-4200844";i:10;s:1:"-";i:11;s:13:"Franean1_3540";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:13:"Franean1_3540";i:14;s:6:"Operon";i:15;s:6:"360587";i:16;s:27:"Franean1_3539;Franean1_3540";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4201376-4201591";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4201625-4202822";i:10;s:1:"+";i:11;s:13:"Franean1_3541";i:12;s:27:"Periplasmic binding protein";i:13;s:13:"Franean1_3541";i:14;s:6:"Operon";i:15;s:6:"360588";i:16;s:69:"Franean1_3541;Franean1_3542;Franean1_3543;Franean1_3544;Franean1_3545";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4938454-4938582";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4938709-4941040";i:10;s:1:"+";i:11;s:13:"Franean1_4158";i:12;s:20:"Magnesium chelatase ";i:13;s:13:"Franean1_4158";i:14;s:6:"Operon";i:15;s:6:"360694";i:16;s:83:"Franean1_4158;Franean1_4159;Franean1_4160;Franean1_4161;Franean1_4162;Franean1_4163";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5838831-5838906";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5838534-5838777";i:10;s:1:"-";i:11;s:13:"Franean1_4866";i:12;s:0:"";i:13;s:13:"Franean1_4866";i:14;s:6:"Operon";i:15;s:6:"360825";i:16;s:81:"Franean1_4862(cobN);Franean1_4863;Franean1_4864(cobD);Franean1_4865;Franean1_4866";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5910498-5910611";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5908904-5910461";i:10;s:1:"-";i:11;s:13:"Franean1_4922";i:12;s:21:"Cysteine desulfurase ";i:13;s:13:"Franean1_4922";i:14;s:11:"Single gene";i:15;s:7:"2150834";i:16;s:13:"Franean1_4922";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6805021-6805140";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"6807011-6808853";i:10;s:1:"-";i:11;s:13:"Franean1_5610";i:12;s:25:"Methyltransferase type 12";i:13;s:13:"Franean1_5610";i:14;s:11:"Single gene";i:15;s:7:"2151213";i:16;s:13:"Franean1_5610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6974725-6974887";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"6973618-6974722";i:10;s:1:"-";i:11;s:13:"Franean1_5739";i:12;s:15:"NLP/P60 protein";i:13;s:13:"Franean1_5739";i:14;s:11:"Single gene";i:15;s:7:"2151272";i:16;s:13:"Franean1_5739";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"7938173-7938379";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"7940547-7941216";i:10;s:1:"-";i:11;s:13:"Franean1_6529";i:12;s:0:"";i:13;s:13:"Franean1_6529";i:14;s:11:"Single gene";i:15;s:7:"2151643";i:16;s:13:"Franean1_6529";i:17;s:0:"";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_009921.1";i:2;s:20:"Frankia sp. EAN1pec ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"8014704-8014880";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"8014313-8014700";i:10;s:1:"-";i:11;s:13:"Franean1_6585";i:12;s:31:"Transglycosylase domain protein";i:13;s:13:"Franean1_6585";i:14;s:11:"Single gene";i:15;s:7:"2151667";i:16;s:13:"Franean1_6585";i:17;s:0:"";i:18;s:15:"View Structure ";}}
