Genome: Bacillus pumilus SAFR-032 (NC_009848.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 163025-163200 (+)glmS163294-165097 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BPUM_0165Single gene

DOOR ID: 2141202		BPUM_0165 (glmS) View Structure
2 188769-188868 (+)purine188945-190118 (+)ydhL

MFS transporter		BPUM_0198Single gene

DOOR ID: 2141218		BPUM_0198 (ydhL) View Structure
3 318462-318554 (+)c-di-GMP-I318694-329407 (+)BPUM_0319

Non-ribosomal peptide synthetase		BPUM_0319operon

DOOR ID: 356879		BPUM_0319,
BPUM_0320,
BPUM_0321,
BPUM_0322,
BPUM_0323,
BPUM_0324		 View Structure
4 448668-448813 (+)ydaO-yuaA448925-450752 (+)ydaO

Amino acid permease		BPUM_0406Operon

DOOR ID: 356893		BPUM_0406 (ydaO),
BPUM_0407 (ydaP)		 View Structure
5 465460-465593 (+)ydaO-yuaA465670-466912 (+)BPUM_0421

Sodium:dicarboxylate symporter		BPUM_0421Single gene

DOOR ID: 2141322		BPUM_0421 View Structure
6 629059-629160 (+)purine629304-630630 (+)pbuG

Guanine permease		BPUM_0592Single gene

DOOR ID: 2141398		BPUM_0592 (pbuG) View Structure
7 632850-632951 (+)purine633120-633609 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BPUM_0596Operon

DOOR ID: 356928		BPUM_0596 (purE),
BPUM_0597 (purK),
BPUM_0598 (purB),
BPUM_0599 (purC),
BPUM_0600 (purS),
BPUM_0601 (purQ),
BPUM_0602 (purL),
BPUM_0603 (purF),
BPUM_0604 (purM),
BPUM_0605 (purN),
BPUM_0606 (purH),
BPUM_0607 (purD)		 View Structure
8 1116823-1116941 (-)SAM1114902-1116744 (-)yitJ

Homocysteine methyltransferase (0)		BPUM_1027Operon

DOOR ID: 356991		BPUM_1026,
BPUM_1027 (yitJ)		 View Structure
9 1181008-1181117 (+)TPP1181195-1181906 (+)tenA

Aminopyrimidine aminohydrolase 		BPUM_1094Operon

DOOR ID: 357006		BPUM_1094 (tenA),
BPUM_1095 (tenI),
BPUM_1096 (goxB),
BPUM_1097 (thiS),
BPUM_1098 (thiG),
BPUM_1099 (thiF),
BPUM_1100 (thiDA)		 View Structure
10 1197119-1197240 (+)SAM1197319-1198438 (+)yjcI

Cystathionine gamma-synthase (8)		BPUM_1119Operon

DOOR ID: 357012		BPUM_1119 (yjcI),
BPUM_1120 (yjcJ)		 View Structure
11 1270856-1270964 (+)ykkC-yxkD1271030-1271360 (+)BPUM_1202

Multidrug resistance protein SMR		BPUM_1202Operon

DOOR ID: 357028		BPUM_1202,
BPUM_1203 (ykkD)		 View Structure
12 1281960-1282151 (-)cobalamin1279518-1281807 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BPUM_1215Single gene

DOOR ID: 2141707		BPUM_1215 (metE) View Structure
13 1287638-1287801 (+)ykoK1288008-1289367 (+)ykoK

Magnesium transporter MgtE		BPUM_1225Single gene

DOOR ID: 2141715		BPUM_1225 (ykoK) View Structure
14 1297053-1297160 (+)yybP-ykoY1297256-1298048 (+)ykoY

BPUM_1236Single gene

DOOR ID: 2141723		BPUM_1236 (ykoY) View Structure
15 1311509-1311667 (-)SAM1310235-1311429 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BPUM_1250Operon

DOOR ID: 357036		BPUM_1249 (mtnA),
BPUM_1250 (mtnK)		 View Structure
16 1313068-1313169 (+)SAM1313241-1314492 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BPUM_1252Operon

DOOR ID: 357037		BPUM_1252 (mtnW),
BPUM_1253 (mtnX),
BPUM_1254 (mtnB),
BPUM_1255 (mtnZ)		 View Structure
17 1324514-1324558 (+)PreQ11324717-1325374 (+)BPUM_1263

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BPUM_1263Operon

DOOR ID: 357039		BPUM_1263,
BPUM_1264 (queD),
BPUM_1265 (queE),
BPUM_1266 (queF)		 View Structure
18 1510999-1511101 (+)SAM1511335-1512037 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		BPUM_1456Operon

DOOR ID: 357074		BPUM_1456 (cysH),
BPUM_1457 (cysP),
BPUM_1458 (sat),
BPUM_1459 (cysC),
BPUM_1460 (cysG),
BPUM_1461 (cbiX),
BPUM_1462		 View Structure
19 1671795-1671834 (-)SAM-SAH1669846-1671373 (+)ymcB

tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase ((Dimethylallyl)adenosine tRNA methylthiotransferase MiaB) (tRNA-i(6)A37 methylthiotransferase)		BPUM_1605Operon

DOOR ID: 357102		BPUM_1605 (ymcB),
BPUM_1606 (ymcA)		 View Structure
20 1996766-1996865 (-)purine1996063-1996648 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BPUM_1944Operon

DOOR ID: 357173		BPUM_1943 (pbuX),
BPUM_1944 (xpt)		 View Structure
21 2082724-2082855 (-)FMN2081997-2082579 (-)ypaA

Riboflavin transporter		BPUM_2038Single gene

DOOR ID: 2142015		BPUM_2038 (ypaA) View Structure
22 2102208-2102350 (-)FMN2101303-2101954 (-)ribE

Riboflavin synthase subunit alpha		BPUM_2061Operon

DOOR ID: 357201		BPUM_2059 (ribH),
BPUM_2060 (ribA),
BPUM_2061 (ribE)		 View Structure
23 2215984-2216091 (-)glycine2214682-2215780 (-)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		BPUM_2189Operon

DOOR ID: 357229		BPUM_2187 (gcvPB),
BPUM_2188 (gcvPA),
BPUM_2189 (gcvT)		 View Structure
24 2431528-2431636 (-)TPP2429641-2431399 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BPUM_2421Single gene

DOOR ID: 2142144		BPUM_2421 (thiC) View Structure
25 2515059-2515236 (-)lysine2513688-2514918 (-)lysC

Aspartokinase 		BPUM_2505Single gene

DOOR ID: 2142173		BPUM_2505 (lysC) View Structure
26 2700051-2700184 (-)SAM2698652-2699855 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BPUM_2686Single gene

DOOR ID: 2142260		BPUM_2686 (metK) View Structure
27 2738685-2738786 (+)TPP2738884-2739460 (+)BPUM_2725

Thiamine biosynthesis protein ThiT		BPUM_2725Single gene

DOOR ID: 2142272		BPUM_2725 View Structure
28 2924764-2924872 (-)SAM2923583-2924609 (-)BPUM_2932

Methionine import ATP-binding protein MetN 		BPUM_2932Operon

DOOR ID: 357368		BPUM_2930,
BPUM_2931,
BPUM_2932		 View Structure
29 2983380-2983558 (-)lysine2981783-2983190 (-)BPUM_2995

Arginine:ornithine antiporter		BPUM_2995Single gene

DOOR ID: 2142385		BPUM_2995 View Structure
30 3462027-3462136 (-)SAM3460738-3461857 (-)BPUM_3498

Sugar ABC transporter substrate-binding protein		BPUM_3498Single gene

DOOR ID: 2142559		BPUM_3498 View Structure
31 3523729-3523841 (+)SAM3523928-3525050 (+)BPUM_3562

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)		BPUM_3562Single gene

DOOR ID: 2142582		BPUM_3562 View Structure
32 3539312-3539415 (-)TPP3538537-3539224 (-)BPUM_3574

Aminopyrimidine aminohydrolase 		BPUM_3574Operon

DOOR ID: 357503		BPUM_3571 (ykoC),
BPUM_3572,
BPUM_3573 (ykoE),
BPUM_3574		 View Structure
33 3618347-3618426 (-)glycine3616837-3618184 (-)aapA

D-alanine/D-serine/glycine permease		BPUM_3652Single gene

DOOR ID: 2142619		BPUM_3652 (aapA) View Structure