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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
327748-327872
(-)
TPP
325688-327632 (-)
Spro_0284
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Spro_0284
Operon
DOOR ID:
355088
Spro_0279
(thiH)
,
Spro_0280
(thiG)
,
Spro_0281,
Spro_0282,
Spro_0283,
Spro_0284
View Structure
2
463043-463087
(+)
mini-ykkC
463107-463434 (+)
Spro_0415
Spro_0415
Single gene
DOOR ID:
2138069
Spro_0415
View Structure
3
820661-820766
(-)
TPP
819615-820602 (-)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Spro_0737
Operon
DOOR ID:
355178
Spro_0735
(thiQ)
,
Spro_0736
(thiP)
,
Spro_0737
(tbpA)
View Structure
4
1310029-1310091
(-)
fluoride
1309569-1309953 (-)
Spro_1192
Putative fluoride ion transporter CrcB
Spro_1192
Single gene
DOOR ID:
2138380
Spro_1192
View Structure
5
1451002-1451144
(+)
MOCO
1452144-1452657 (+)
Spro_1321
Molybdenum cofactor biosynthesis protein B
Spro_1321
Operon
DOOR ID:
355285
Spro_1320
(moaA)
,
Spro_1321,
Spro_1322
(moaC)
,
Spro_1323
(moaD)
,
Spro_1324
(moaE)
View Structure
6
2785471-2785644
(-)
ykoK
2784375-2785395 (-)
Spro_2531
MgtE integral membrane region
Spro_2531
Single gene
DOOR ID:
2139001
Spro_2531
View Structure
7
3098123-3098304
(+)
yybP-ykoY
3098317-3098887 (+)
Spro_2817
Putative manganese efflux pump MntP
Spro_2817
Single gene
DOOR ID:
2139139
Spro_2817
View Structure
8
3437077-3437179
(+)
TPP
3437241-3437922 (+)
Spro_3122
Aminopyrimidine aminohydrolase
Spro_3122
Operon
DOOR ID:
355609
Spro_3122,
Spro_3123,
Spro_3124,
Spro_3125
View Structure
9
3954416-3954507
(-)
TPP
3953584-3954379 (-)
Spro_3578
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Spro_3578
Operon
DOOR ID:
355691
Spro_3577,
Spro_3578
View Structure
10
4751400-4751561
(-)
FMN
4750635-4751289 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Spro_4286
Single gene
DOOR ID:
2139720
Spro_4286
(ribB)
View Structure
11
4955718-4955911
(+)
lysine
4956020-4957388 (+)
Spro_4479
Aspartokinase
Spro_4479
Single gene
DOOR ID:
2139793
Spro_4479
View Structure
12
5285279-5285492
(-)
cobalamin
5283339-5285211 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Spro_4770
Operon
DOOR ID:
355940
Spro_4769,
Spro_4770
(btuB)
View Structure
Genome:
Serratia proteamaculans 568
(
NC_009832.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"463043-463087";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"463107-463434";i:10;s:1:"+";i:11;s:9:"Spro_0415";i:12;s:0:"";i:13;s:9:"Spro_0415";i:14;s:11:"Single gene";i:15;s:7:"2138069";i:16;s:9:"Spro_0415";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"820661-820766";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"819615-820602";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:9:"Spro_0737";i:14;s:6:"Operon";i:15;s:6:"355178";i:16;s:47:"Spro_0735(thiQ);Spro_0736(thiP);Spro_0737(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1310029-1310091";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1309569-1309953";i:10;s:1:"-";i:11;s:9:"Spro_1192";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Spro_1192";i:14;s:11:"Single gene";i:15;s:7:"2138380";i:16;s:9:"Spro_1192";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1451002-1451144";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1452144-1452657";i:10;s:1:"+";i:11;s:9:"Spro_1321";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"Spro_1321";i:14;s:6:"Operon";i:15;s:6:"355285";i:16;s:73:"Spro_1320(moaA);Spro_1321;Spro_1322(moaC);Spro_1323(moaD);Spro_1324(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2785471-2785644";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2784375-2785395";i:10;s:1:"-";i:11;s:9:"Spro_2531";i:12;s:29:"MgtE integral membrane region";i:13;s:9:"Spro_2531";i:14;s:11:"Single gene";i:15;s:7:"2139001";i:16;s:9:"Spro_2531";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3098123-3098304";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3098317-3098887";i:10;s:1:"+";i:11;s:9:"Spro_2817";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"Spro_2817";i:14;s:11:"Single gene";i:15;s:7:"2139139";i:16;s:9:"Spro_2817";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3437077-3437179";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3437241-3437922";i:10;s:1:"+";i:11;s:9:"Spro_3122";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"Spro_3122";i:14;s:6:"Operon";i:15;s:6:"355609";i:16;s:39:"Spro_3122;Spro_3123;Spro_3124;Spro_3125";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3954416-3954507";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3953584-3954379";i:10;s:1:"-";i:11;s:9:"Spro_3578";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Spro_3578";i:14;s:6:"Operon";i:15;s:6:"355691";i:16;s:19:"Spro_3577;Spro_3578";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4751400-4751561";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4750635-4751289";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Spro_4286";i:14;s:11:"Single gene";i:15;s:7:"2139720";i:16;s:15:"Spro_4286(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4955718-4955911";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4956020-4957388";i:10;s:1:"+";i:11;s:9:"Spro_4479";i:12;s:14:"Aspartokinase ";i:13;s:9:"Spro_4479";i:14;s:11:"Single gene";i:15;s:7:"2139793";i:16;s:9:"Spro_4479";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009832.1";i:2;s:28:"Serratia proteamaculans 568 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5285279-5285492";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5283339-5285211";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"Spro_4770";i:14;s:6:"Operon";i:15;s:6:"355940";i:16;s:25:"Spro_4769;Spro_4770(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
