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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
610025-610076
(+)
glutamine
610559-610862 (+)
rplW
50S ribosomal protein L23
Tlet_0581
Operon
DOOR ID:
353989
Tlet_0574
(rpsL)
,
Tlet_0575,
Tlet_0576,
Tlet_0577,
Tlet_0578
(rpsJ)
,
Tlet_0579
(rplC)
,
Tlet_0580
(rplD)
,
Tlet_0581
(rplW)
,
Tlet_0582
(rplB)
,
Tlet_0583
(rpsS)
,
Tlet_0584
(rplV)
,
Tlet_0585,
Tlet_0586
(rplP)
,
Tlet_0587,
Tlet_0588,
Tlet_0589
(rplN)
,
Tlet_0590
(rplX)
,
Tlet_0591
(rplE)
,
Tlet_0592
(rpsN)
,
Tlet_0593
(rpsH)
,
Tlet_0594
(rplF)
,
Tlet_0595,
Tlet_0596
(rpsE)
,
Tlet_0597
(rpmD)
,
Tlet_0598
(rplO)
,
Tlet_0599
(secY)
,
Tlet_0600,
Tlet_0601,
Tlet_0602,
Tlet_0603,
Tlet_0604
(rpsM)
,
Tlet_0605,
Tlet_0606
(rpsD)
,
Tlet_0607,
Tlet_0608
View Structure
2
982238-982299
(-)
fluoride
981527-982205 (-)
Tlet_0948
Tlet_0948
Operon
DOOR ID:
354049
Tlet_0945,
Tlet_0946,
Tlet_0947,
Tlet_0948
View Structure
3
1295825-1296012
(+)
cobalamin
1296407-1297451 (+)
Tlet_1236
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Tlet_1236
Operon
DOOR ID:
354112
Tlet_1236,
Tlet_1237,
Tlet_1238,
Tlet_1239,
Tlet_1240,
Tlet_1241,
Tlet_1242
View Structure
4
1332492-1332669
(-)
cobalamin
1331542-1332436 (-)
Tlet_1275
Periplasmic binding protein
Tlet_1275
Operon
DOOR ID:
354118
Tlet_1272,
Tlet_1273,
Tlet_1274,
Tlet_1275
View Structure
5
1355659-1355767
(+)
TPP
1355812-1356799 (+)
Tlet_1299
ABC transporter; periplasmic binding protein; thiB subfamily
Tlet_1299
Operon
DOOR ID:
354122
Tlet_1299,
Tlet_1300
View Structure
6
1514739-1514859
(+)
MOCO
1514938-1516540 (+)
Tlet_1448
Delta-1-pyrroline-5-carboxylate dehydrogenase
Tlet_1448
Single gene
DOOR ID:
2135393
Tlet_1448
View Structure
7
1532495-1532676
(+)
cobalamin
1533728-1534565 (+)
Tlet_1462
CoA-binding domain protein
Tlet_1462
Operon
DOOR ID:
354159
Tlet_1461,
Tlet_1462
View Structure
8
1819629-1819739
(+)
TPP
1819792-1820539 (+)
Tlet_1750
Thiamine thiazole synthase
Tlet_1750
Operon
DOOR ID:
354218
Tlet_1750,
Tlet_1751,
Tlet_1752,
Tlet_1753,
Tlet_1754,
Tlet_1755,
Tlet_1756,
Tlet_1757
View Structure
9
1992239-1992341
(-)
purine
1991707-1992193 (-)
Tlet_1917
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Tlet_1917
Operon
DOOR ID:
354249
Tlet_1908,
Tlet_1909,
Tlet_1910,
Tlet_1911,
Tlet_1912,
Tlet_1913,
Tlet_1914,
Tlet_1915,
Tlet_1916,
Tlet_1917
View Structure
Genome:
Thermotoga lettingae TMO
(
NC_009828.1
);
Phylum:
Thermotogae
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"610025-610076";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"610559-610862";i:10;s:1:"+";i:11;s:4:"rplW";i:12;s:25:"50S ribosomal protein L23";i:13;s:9:"Tlet_0581";i:14;s:6:"Operon";i:15;s:6:"353989";i:16;s:475:"Tlet_0574(rpsL);Tlet_0575;Tlet_0576;Tlet_0577;Tlet_0578(rpsJ);Tlet_0579(rplC);Tlet_0580(rplD);Tlet_0581(rplW);Tlet_0582(rplB);Tlet_0583(rpsS);Tlet_0584(rplV);Tlet_0585;Tlet_0586(rplP);Tlet_0587;Tlet_0588;Tlet_0589(rplN);Tlet_0590(rplX);Tlet_0591(rplE);Tlet_0592(rpsN);Tlet_0593(rpsH);Tlet_0594(rplF);Tlet_0595;Tlet_0596(rpsE);Tlet_0597(rpmD);Tlet_0598(rplO);Tlet_0599(secY);Tlet_0600;Tlet_0601;Tlet_0602;Tlet_0603;Tlet_0604(rpsM);Tlet_0605;Tlet_0606(rpsD);Tlet_0607;Tlet_0608";i:17;s:24:"translation [GO:0006412]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"982238-982299";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"981527-982205";i:10;s:1:"-";i:11;s:9:"Tlet_0948";i:12;s:0:"";i:13;s:9:"Tlet_0948";i:14;s:6:"Operon";i:15;s:6:"354049";i:16;s:39:"Tlet_0945;Tlet_0946;Tlet_0947;Tlet_0948";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1295825-1296012";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1296407-1297451";i:10;s:1:"+";i:11;s:9:"Tlet_1236";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:9:"Tlet_1236";i:14;s:6:"Operon";i:15;s:6:"354112";i:16;s:69:"Tlet_1236;Tlet_1237;Tlet_1238;Tlet_1239;Tlet_1240;Tlet_1241;Tlet_1242";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1332492-1332669";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1331542-1332436";i:10;s:1:"-";i:11;s:9:"Tlet_1275";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Tlet_1275";i:14;s:6:"Operon";i:15;s:6:"354118";i:16;s:39:"Tlet_1272;Tlet_1273;Tlet_1274;Tlet_1275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1355659-1355767";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1355812-1356799";i:10;s:1:"+";i:11;s:9:"Tlet_1299";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Tlet_1299";i:14;s:6:"Operon";i:15;s:6:"354122";i:16;s:19:"Tlet_1299;Tlet_1300";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1514739-1514859";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1514938-1516540";i:10;s:1:"+";i:11;s:9:"Tlet_1448";i:12;s:45:"Delta-1-pyrroline-5-carboxylate dehydrogenase";i:13;s:9:"Tlet_1448";i:14;s:11:"Single gene";i:15;s:7:"2135393";i:16;s:9:"Tlet_1448";i:17;s:51:"proline catabolic process to glutamate [GO:0010133]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1532495-1532676";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1533728-1534565";i:10;s:1:"+";i:11;s:9:"Tlet_1462";i:12;s:26:"CoA-binding domain protein";i:13;s:9:"Tlet_1462";i:14;s:6:"Operon";i:15;s:6:"354159";i:16;s:19:"Tlet_1461;Tlet_1462";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1819629-1819739";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1819792-1820539";i:10;s:1:"+";i:11;s:9:"Tlet_1750";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:9:"Tlet_1750";i:14;s:6:"Operon";i:15;s:6:"354218";i:16;s:79:"Tlet_1750;Tlet_1751;Tlet_1752;Tlet_1753;Tlet_1754;Tlet_1755;Tlet_1756;Tlet_1757";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009828.1";i:2;s:25:"Thermotoga lettingae TMO ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1992239-1992341";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1991707-1992193";i:10;s:1:"-";i:11;s:9:"Tlet_1917";i:12;s:117:"N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)";i:13;s:9:"Tlet_1917";i:14;s:6:"Operon";i:15;s:6:"354249";i:16;s:99:"Tlet_1908;Tlet_1909;Tlet_1910;Tlet_1911;Tlet_1912;Tlet_1913;Tlet_1914;Tlet_1915;Tlet_1916;Tlet_1917";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}}