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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77266-77365
(-)
TPP
76251-77235 (-)
tbpA
EcHS_A0072
Operon
DOOR ID:
351589
EcHS_A0070
(thiQ)
,
EcHS_A0071
(thiP)
,
EcHS_A0072
(tbpA)
View Structure
2
843515-843659
(+)
MOCO
844657-845170 (+)
moaB
EcHS_A0836
Operon
DOOR ID:
351743
EcHS_A0835
(moaA)
,
EcHS_A0836
(moaB)
,
EcHS_A0837
(moaC)
,
EcHS_A0838
(moaD)
,
EcHS_A0839
(moaE)
View Structure
3
1924435-1924536
(+)
yybP-ykoY
1924666-1925233 (+)
EcHS_A1911
Probable manganese efflux pump MntP
EcHS_A1911
Single gene
DOOR ID:
2131997
EcHS_A1911
View Structure
4
2227685-2227781
(-)
TPP
2226861-2227650 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcHS_A2240
Operon
DOOR ID:
351987
EcHS_A2237,
EcHS_A2238,
EcHS_A2239
(thiD)
,
EcHS_A2240
(thiM)
View Structure
5
3229401-3229549
(-)
FMN
3228643-3229297 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcHS_A3219
Single gene
DOOR ID:
2132401
EcHS_A3219
(ribB)
View Structure
6
4193050-4193240
(+)
cobalamin
4193304-4195149 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EcHS_A4200
Operon
DOOR ID:
352377
EcHS_A4200
(btuB)
,
EcHS_A4201
(murI)
View Structure
7
4225762-4225862
(-)
TPP
4223785-4225681 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcHS_A4228
Operon
DOOR ID:
352382
EcHS_A4223
(thiH)
,
EcHS_A4224
(thiG)
,
EcHS_A4225
(thiS)
,
EcHS_A4226
(thiF)
,
EcHS_A4227
(thiE)
,
EcHS_A4228
(thiC)
View Structure
8
4265274-4265470
(-)
lysine
4263832-4265182 (-)
lysC
EcHS_A4263
Single gene
DOOR ID:
2132739
EcHS_A4263
(lysC)
View Structure
9
4402107-4402153
(+)
mini-ykkC
4402170-4402488 (+)
sugE
EcHS_A4392
Single gene
DOOR ID:
2132796
EcHS_A4392
(sugE)
View Structure
10
4502631-4502746
(+)
Mg sensor
4502839-4505536 (+)
mgtA
EcHS_A4497
Single gene
DOOR ID:
2132840
EcHS_A4497
(mgtA)
View Structure
Genome:
Escherichia coli HS
(
NC_009800.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3229401-3229549";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3228643-3229297";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"EcHS_A3219";i:14;s:11:"Single gene";i:15;s:7:"2132401";i:16;s:16:"EcHS_A3219(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4193050-4193240";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4193304-4195149";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"EcHS_A4200";i:14;s:6:"Operon";i:15;s:6:"352377";i:16;s:33:"EcHS_A4200(btuB);EcHS_A4201(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4225762-4225862";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4223785-4225681";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"EcHS_A4228";i:14;s:6:"Operon";i:15;s:6:"352382";i:16;s:101:"EcHS_A4223(thiH);EcHS_A4224(thiG);EcHS_A4225(thiS);EcHS_A4226(thiF);EcHS_A4227(thiE);EcHS_A4228(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4265274-4265470";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4263832-4265182";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:10:"EcHS_A4263";i:14;s:11:"Single gene";i:15;s:7:"2132739";i:16;s:16:"EcHS_A4263(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4402107-4402153";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4402170-4402488";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"EcHS_A4392";i:14;s:11:"Single gene";i:15;s:7:"2132796";i:16;s:16:"EcHS_A4392(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009800.1";i:2;s:19:"Escherichia coli HS";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4502631-4502746";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4502839-4505536";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:10:"EcHS_A4497";i:14;s:11:"Single gene";i:15;s:7:"2132840";i:16;s:16:"EcHS_A4497(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
