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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
655531-655628
(+)
TPP
655659-656448 (+)
CKO_00680
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CKO_00680
Operon
DOOR ID:
350690
CKO_00680,
CKO_00681,
CKO_00682
View Structure
2
771363-771537
(+)
cobalamin
771635-773015 (+)
CKO_00802
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
CKO_00802
Operon
DOOR ID:
350707
CKO_00802,
CKO_00804
(cobD)
,
CKO_00805
(cbiC)
,
CKO_00806
(cbiD)
,
CKO_00807,
CKO_00808,
CKO_00809,
CKO_00810,
CKO_00811,
CKO_00812,
CKO_00813,
CKO_00814,
CKO_00815,
CKO_00816,
CKO_00817,
CKO_00818
(cbiO)
,
CKO_00819,
CKO_00820
(cobU)
,
CKO_00821
(cobS)
,
CKO_00822
(cobT)
View Structure
3
1121639-1121737
(-)
yybP-ykoY
1121442-1121589 (-)
CKO_01157
CKO_01157
Operon
DOOR ID:
350776
CKO_01156,
CKO_01157
View Structure
4
1237109-1237335
(-)
cobalamin
1235860-1236928 (-)
CKO_01267
CKO_01267
Operon
DOOR ID:
350792
CKO_01261,
CKO_01262,
CKO_01263,
CKO_01264,
CKO_01265,
CKO_01266,
CKO_01267
View Structure
5
1409469-1409541
(+)
fluoride
1409616-1410519 (+)
CKO_01458
CKO_01458
Single gene
DOOR ID:
2129882
CKO_01458
View Structure
6
1484941-1485003
(+)
fluoride
1485053-1486613 (+)
CKO_01533
CKO_01533
Operon
DOOR ID:
350842
CKO_01533,
CKO_01534
View Structure
7
1490109-1490183
(-)
fluoride
1489443-1489872 (-)
CKO_01536
CKO_01536
Single gene
DOOR ID:
2129913
CKO_01536
View Structure
8
2170919-2171065
(-)
MOCO
2169404-2169917 (-)
CKO_02344
Molybdenum cofactor biosynthesis protein B
CKO_02344
Operon
DOOR ID:
350992
CKO_02340,
CKO_02341
(moaE)
,
CKO_02342
(moaD)
,
CKO_02343
(moaC)
,
CKO_02344,
CKO_02345
(moaA)
View Structure
9
2771314-2771423
(+)
TPP
2771508-2773404 (+)
CKO_02992
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CKO_02992
Operon
DOOR ID:
351120
CKO_02992,
CKO_02993,
CKO_02994,
CKO_02995,
CKO_02996
(thiG)
,
CKO_02997
(thiH)
,
CKO_02998
View Structure
10
2804043-2804233
(-)
cobalamin
2802109-2803978 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
CKO_03025
Operon
DOOR ID:
351127
CKO_03024,
CKO_03025
(btuB)
View Structure
11
3078977-3079098
(+)
TPP
3079117-3080113 (+)
tbpA
CKO_03314
Operon
DOOR ID:
351187
CKO_03314
(tbpA)
,
CKO_03315
(thiP)
,
CKO_03316
(thiQ)
View Structure
12
3321666-3321780
(-)
Mg sensor
3321520-3321646 (+)
CKO_03568
CKO_03568
Single gene
DOOR ID:
2130685
CKO_03568
View Structure
13
3425305-3425349
(-)
mini-ykkC
3424968-3425286 (-)
CKO_03683
CKO_03683
Single gene
DOOR ID:
2130734
CKO_03683
View Structure
14
4106800-4107005
(-)
FMN
4106040-4106694 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
CKO_04434
Single gene
DOOR ID:
2131028
CKO_04434
(ribB)
View Structure
15
4527413-4527596
(+)
ykoK
4527652-4528666 (+)
CKO_04939
CKO_04939
Single gene
DOOR ID:
2131165
CKO_04939
View Structure
Genome:
Citrobacter koseri ATCC BAA-895
(
NC_009792.1
);
Phylum:
Gammaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"655531-655628";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"655659-656448";i:10;s:1:"+";i:11;s:9:"CKO_00680";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"CKO_00680";i:14;s:6:"Operon";i:15;s:6:"350690";i:16;s:29:"CKO_00680;CKO_00681;CKO_00682";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"771363-771537";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"771635-773015";i:10;s:1:"+";i:11;s:9:"CKO_00802";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"CKO_00802";i:14;s:6:"Operon";i:15;s:6:"350707";i:16;s:241:"CKO_00802;CKO_00804(cobD);CKO_00805(cbiC);CKO_00806(cbiD);CKO_00807;CKO_00808;CKO_00809;CKO_00810;CKO_00811;CKO_00812;CKO_00813;CKO_00814;CKO_00815;CKO_00816;CKO_00817;CKO_00818(cbiO);CKO_00819;CKO_00820(cobU);CKO_00821(cobS);CKO_00822(cobT)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1121639-1121737";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1121442-1121589";i:10;s:1:"-";i:11;s:9:"CKO_01157";i:12;s:0:"";i:13;s:9:"CKO_01157";i:14;s:6:"Operon";i:15;s:6:"350776";i:16;s:19:"CKO_01156;CKO_01157";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1237109-1237335";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1235860-1236928";i:10;s:1:"-";i:11;s:9:"CKO_01267";i:12;s:0:"";i:13;s:9:"CKO_01267";i:14;s:6:"Operon";i:15;s:6:"350792";i:16;s:69:"CKO_01261;CKO_01262;CKO_01263;CKO_01264;CKO_01265;CKO_01266;CKO_01267";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1409469-1409541";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1409616-1410519";i:10;s:1:"+";i:11;s:9:"CKO_01458";i:12;s:0:"";i:13;s:9:"CKO_01458";i:14;s:11:"Single gene";i:15;s:7:"2129882";i:16;s:9:"CKO_01458";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1484941-1485003";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1485053-1486613";i:10;s:1:"+";i:11;s:9:"CKO_01533";i:12;s:0:"";i:13;s:9:"CKO_01533";i:14;s:6:"Operon";i:15;s:6:"350842";i:16;s:19:"CKO_01533;CKO_01534";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1490109-1490183";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1489443-1489872";i:10;s:1:"-";i:11;s:9:"CKO_01536";i:12;s:0:"";i:13;s:9:"CKO_01536";i:14;s:11:"Single gene";i:15;s:7:"2129913";i:16;s:9:"CKO_01536";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2170919-2171065";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2169404-2169917";i:10;s:1:"-";i:11;s:9:"CKO_02344";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"CKO_02344";i:14;s:6:"Operon";i:15;s:6:"350992";i:16;s:83:"CKO_02340;CKO_02341(moaE);CKO_02342(moaD);CKO_02343(moaC);CKO_02344;CKO_02345(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2771314-2771423";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2771508-2773404";i:10;s:1:"+";i:11;s:9:"CKO_02992";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"CKO_02992";i:14;s:6:"Operon";i:15;s:6:"351120";i:16;s:81:"CKO_02992;CKO_02993;CKO_02994;CKO_02995;CKO_02996(thiG);CKO_02997(thiH);CKO_02998";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2804043-2804233";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2802109-2803978";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"CKO_03025";i:14;s:6:"Operon";i:15;s:6:"351127";i:16;s:25:"CKO_03024;CKO_03025(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3078977-3079098";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3079117-3080113";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:9:"CKO_03314";i:14;s:6:"Operon";i:15;s:6:"351187";i:16;s:47:"CKO_03314(tbpA);CKO_03315(thiP);CKO_03316(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3321666-3321780";i:6;s:1:"-";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"3321520-3321646";i:10;s:1:"+";i:11;s:9:"CKO_03568";i:12;s:0:"";i:13;s:9:"CKO_03568";i:14;s:11:"Single gene";i:15;s:7:"2130685";i:16;s:9:"CKO_03568";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3425305-3425349";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3424968-3425286";i:10;s:1:"-";i:11;s:9:"CKO_03683";i:12;s:0:"";i:13;s:9:"CKO_03683";i:14;s:11:"Single gene";i:15;s:7:"2130734";i:16;s:9:"CKO_03683";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4106800-4107005";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4106040-4106694";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"CKO_04434";i:14;s:11:"Single gene";i:15;s:7:"2131028";i:16;s:15:"CKO_04434(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009792.1";i:2;s:32:"Citrobacter koseri ATCC BAA-895 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4527413-4527596";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"4527652-4528666";i:10;s:1:"+";i:11;s:9:"CKO_04939";i:12;s:0:"";i:13;s:9:"CKO_04939";i:14;s:11:"Single gene";i:15;s:7:"2131165";i:16;s:9:"CKO_04939";i:17;s:0:"";i:18;s:15:"View Structure ";}}