RiboswitchDB

Genome: Streptococcus gordonii str. Challis substr. CH1 (NC_009785.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

1209535-1209632 (-)

purine

1208868-1209450 (-)

xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

Operon

DOOR ID: 350295

SGO_1157 (pbuX),
SGO_1158 (xpt)

2

1439939-1440073 (-)

preQ1-II

1437326-1439285 (-)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

Operon

DOOR ID: 350345

SGO_1388 (pulA-1),
SGO_1389,
SGO_1390 (ligA)

3

1695462-1695618 (-)

ykoK

1692528-1695189 (-)

SGO_1634

Magnesium-translocating P-type ATPase

Operon

DOOR ID: 350400

SGO_1633 (upp),
SGO_1634

4

1732676-1732826 (-)

FMN

1731986-1732544 (-)

SGO_1664

Riboflavin transporter

Operon

DOOR ID: 350407

SGO_1663,
SGO_1664

5

2165610-2165711 (-)

TPP

2165094-2165385 (-)

SGO_2102

Operon

DOOR ID: 350492

SGO_2099,
SGO_2100,
SGO_2101,
SGO_2102

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009785.1";i:2;s:48:"Streptococcus gordonii str. Challis substr. CH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1439939-1440073";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"1437326-1439285";i:10;s:1:"-";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:8:"SGO_1390";i:14;s:6:"Operon";i:15;s:6:"350345";i:16;s:40:"SGO_1388(pulA-1);SGO_1389;SGO_1390(ligA)";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
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";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009785.1";i:2;s:48:"Streptococcus gordonii str. Challis substr. CH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2165610-2165711";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2165094-2165385";i:10;s:1:"-";i:11;s:8:"SGO_2102";i:12;s:0:"";i:13;s:8:"SGO_2102";i:14;s:6:"Operon";i:15;s:6:"350492";i:16;s:35:"SGO_2099;SGO_2100;SGO_2101;SGO_2102";i:17;s:0:"";i:18;s:15:"View Structure
";}}