RiboswitchDB

Genome: Vibrio harveyi ATCC BAA-1116 chromosome II (NC_009784.1); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

545831-545971 (-)

FMN

545000-545657 (-)

ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)

Single gene

DOOR ID: 2127609

VIBHAR_05311 (ribB)

2

1077193-1077239 (-)

mini-ykkC

1077021-1077174 (-)

VIBHAR_05880

Operon

DOOR ID: 349837

VIBHAR_05879,
VIBHAR_05880

3

1582523-1582622 (+)

purine

1582722-1583730 (+)

VIBHAR_06421

Adenine deaminase (ADE) (Adenine aminohydrolase) (AAH)

Single gene

DOOR ID: 2128173

VIBHAR_06421

4

1949765-1949875 (+)

TPP

1949983-1950871 (+)

VIBHAR_06838

Operon

DOOR ID: 349999

VIBHAR_06838,
VIBHAR_06839,
VIBHAR_06840,
VIBHAR_06841,
VIBHAR_06842,
VIBHAR_06843,
VIBHAR_06844 (thiE)

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009784.1";i:2;s:42:"Vibrio harveyi ATCC BAA-1116 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1077193-1077239";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1077021-1077174";i:10;s:1:"-";i:11;s:12:"VIBHAR_05880";i:12;s:0:"";i:13;s:12:"VIBHAR_05880";i:14;s:6:"Operon";i:15;s:6:"349837";i:16;s:25:"VIBHAR_05879;VIBHAR_05880";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009784.1";i:2;s:42:"Vibrio harveyi ATCC BAA-1116 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1582523-1582622";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1582722-1583730";i:10;s:1:"+";i:11;s:12:"VIBHAR_06421";i:12;s:55:"Adenine deaminase (ADE)  (Adenine aminohydrolase) (AAH)";i:13;s:12:"VIBHAR_06421";i:14;s:11:"Single gene";i:15;s:7:"2128173";i:16;s:12:"VIBHAR_06421";i:17;s:116:"adenine catabolic process [GO:0006146]; hypoxanthine salvage [GO:0043103]; nucleotide metabolic process [GO:0009117]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009784.1";i:2;s:42:"Vibrio harveyi ATCC BAA-1116 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1949765-1949875";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1949983-1950871";i:10;s:1:"+";i:11;s:12:"VIBHAR_06838";i:12;s:0:"";i:13;s:12:"VIBHAR_06838";i:14;s:6:"Operon";i:15;s:6:"349999";i:16;s:96:"VIBHAR_06838;VIBHAR_06839;VIBHAR_06840;VIBHAR_06841;VIBHAR_06842;VIBHAR_06843;VIBHAR_06844(thiE)";i:17;s:0:"";i:18;s:15:"View Structure
";}}