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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
253548-253749
(-)
cobalamin
251636-253490 (-)
VIBHAR_00261
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VIBHAR_00261
Single gene
DOOR ID:
2125800
VIBHAR_00261
View Structure
2
354753-354851
(-)
TPP
352646-354587 (-)
VIBHAR_00366
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VIBHAR_00366
Operon
DOOR ID:
349043
VIBHAR_00361
(thiH)
,
VIBHAR_00362
(thiG)
,
VIBHAR_00363,
VIBHAR_00364,
VIBHAR_00365
(thiE)
,
VIBHAR_00366
View Structure
3
437152-437267
(+)
yybP-ykoY
437359-437914 (+)
VIBHAR_00451
VIBHAR_00451
Single gene
DOOR ID:
2125874
VIBHAR_00451
View Structure
4
770477-770626
(+)
TPP
770694-771687 (+)
tbpA
VIBHAR_00788
Operon
DOOR ID:
349113
VIBHAR_00788
(tbpA)
,
VIBHAR_00789
(thiP)
,
VIBHAR_00790
View Structure
5
1587993-1588082
(-)
c-di-GMP-I
1587285-1587876 (-)
VIBHAR_01580
Uncharacterized protein
VIBHAR_01580
single gene
DOOR ID:
2126360
VIBHAR_01580
View Structure
6
1841850-1842030
(+)
lysine
1842139-1843741 (+)
VIBHAR_01828
VIBHAR_01828
Single gene
DOOR ID:
2126461
VIBHAR_01828
View Structure
7
2485238-2485339
(+)
glycine
2485455-2486832 (+)
VIBHAR_02469
VIBHAR_02469
Single gene
DOOR ID:
2126752
VIBHAR_02469
View Structure
8
2978035-2978168
(-)
MOCO
2976444-2976957 (-)
VIBHAR_02953
Molybdenum cofactor biosynthesis protein B
VIBHAR_02953
Operon
DOOR ID:
349508
VIBHAR_02950,
VIBHAR_02951
(moaD)
,
VIBHAR_02952
(moaC)
,
VIBHAR_02953,
VIBHAR_02954
(moaA)
View Structure
9
3337036-3337110
(+)
fluoride
3337340-3338063 (+)
VIBHAR_03307
VIBHAR_03307
Operon
DOOR ID:
349572
VIBHAR_03307,
VIBHAR_03308
View Structure
10
3751076-3751254
(+)
lysine
3751377-3752730 (+)
VIBHAR_03711
Aspartokinase
VIBHAR_03711
Single gene
DOOR ID:
2127305
VIBHAR_03711
View Structure
Genome:
Vibrio harveyi ATCC BAA-1116 chromosome I
(
NC_009783.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"253548-253749";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"251636-253490";i:10;s:1:"-";i:11;s:12:"VIBHAR_00261";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:12:"VIBHAR_00261";i:14;s:11:"Single gene";i:15;s:7:"2125800";i:16;s:12:"VIBHAR_00261";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"354753-354851";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"352646-354587";i:10;s:1:"-";i:11;s:12:"VIBHAR_00366";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"VIBHAR_00366";i:14;s:6:"Operon";i:15;s:6:"349043";i:16;s:95:"VIBHAR_00361(thiH);VIBHAR_00362(thiG);VIBHAR_00363;VIBHAR_00364;VIBHAR_00365(thiE);VIBHAR_00366";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"437152-437267";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"437359-437914";i:10;s:1:"+";i:11;s:12:"VIBHAR_00451";i:12;s:0:"";i:13;s:12:"VIBHAR_00451";i:14;s:11:"Single gene";i:15;s:7:"2125874";i:16;s:12:"VIBHAR_00451";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"770477-770626";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"770694-771687";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:12:"VIBHAR_00788";i:14;s:6:"Operon";i:15;s:6:"349113";i:16;s:50:"VIBHAR_00788(tbpA);VIBHAR_00789(thiP);VIBHAR_00790";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1587993-1588082";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1587285-1587876";i:10;s:1:"-";i:11;s:12:"VIBHAR_01580";i:12;s:23:"Uncharacterized protein";i:13;s:12:"VIBHAR_01580";i:14;s:11:"single gene";i:15;s:7:"2126360";i:16;s:12:"VIBHAR_01580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1841850-1842030";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1842139-1843741";i:10;s:1:"+";i:11;s:12:"VIBHAR_01828";i:12;s:0:"";i:13;s:12:"VIBHAR_01828";i:14;s:11:"Single gene";i:15;s:7:"2126461";i:16;s:12:"VIBHAR_01828";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2485238-2485339";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2485455-2486832";i:10;s:1:"+";i:11;s:12:"VIBHAR_02469";i:12;s:0:"";i:13;s:12:"VIBHAR_02469";i:14;s:11:"Single gene";i:15;s:7:"2126752";i:16;s:12:"VIBHAR_02469";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2978035-2978168";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2976444-2976957";i:10;s:1:"-";i:11;s:12:"VIBHAR_02953";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:12:"VIBHAR_02953";i:14;s:6:"Operon";i:15;s:6:"349508";i:16;s:82:"VIBHAR_02950;VIBHAR_02951(moaD);VIBHAR_02952(moaC);VIBHAR_02953;VIBHAR_02954(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3337036-3337110";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3337340-3338063";i:10;s:1:"+";i:11;s:12:"VIBHAR_03307";i:12;s:0:"";i:13;s:12:"VIBHAR_03307";i:14;s:6:"Operon";i:15;s:6:"349572";i:16;s:25:"VIBHAR_03307;VIBHAR_03308";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009783.1";i:2;s:41:"Vibrio harveyi ATCC BAA-1116 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3751076-3751254";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3751377-3752730";i:10;s:1:"+";i:11;s:12:"VIBHAR_03711";i:12;s:14:"Aspartokinase ";i:13;s:12:"VIBHAR_03711";i:14;s:11:"Single gene";i:15;s:7:"2127305";i:16;s:12:"VIBHAR_03711";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
