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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16093-17083 (+)
SAHV_0012
SAHV_0012
Single gene
DOOR ID:
2124605
SAHV_0012
View Structure
2
430757-430859
(+)
purine
431089-431668 (+)
xprT
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAHV_0385
Operon
DOOR ID:
348525
SAHV_0385
(xprT)
,
SAHV_0386
(pbuX)
,
SAHV_0387
(guaB)
,
SAHV_0388
(guaA)
View Structure
3
786885-786931
(-)
PreQ1
786046-786715 (-)
SAHV_0709
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAHV_0709
Operon
DOOR ID:
348594
SAHV_0707,
SAHV_0708,
SAHV_0709
View Structure
4
908655-908758
(+)
SAM
908846-909872 (+)
SAHV_0833
SAHV_0833
Operon
DOOR ID:
348617
SAHV_0833,
SAHV_0834,
SAHV_0835
View Structure
5
996348-996438
(+)
preQ1-II
997560-997821 (+)
SAHV_0950
SAHV_0950
Single gene
DOOR ID:
2124977
SAHV_0950
View Structure
6
1073627-1073733
(+)
yybP-ykoY
1073808-1074612 (+)
SAHV_1015
SAHV_1015
Single gene
DOOR ID:
2125001
SAHV_1015
View Structure
7
1133701-1133801
(-)
TPP
1133048-1133624 (-)
SAHV_1069
SAHV_1069
Operon
DOOR ID:
348662
SAHV_1067,
SAHV_1068,
SAHV_1069
View Structure
8
1477215-1477390
(+)
lysine
1477471-1478677 (+)
lysC
SAHV_1381
Operon
DOOR ID:
348724
SAHV_1381
(lysC)
,
SAHV_1382
(asd)
,
SAHV_1383
(dapA)
,
SAHV_1384
(dapB)
,
SAHV_1385
(dapD)
View Structure
9
1601610-1601744
(-)
FMN
1601002-1601548 (-)
SAHV_1473
SAHV_1473
Single gene
DOOR ID:
2125175
SAHV_1473
View Structure
10
1654678-1654775
(-)
glycine
1653511-1654603 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAHV_1524
Operon
DOOR ID:
348760
SAHV_1522,
SAHV_1523,
SAHV_1524
(gcvT)
View Structure
11
1791535-1791710
(-)
lysine
1789896-1791390 (-)
SAHV_1668
SAHV_1668
Single gene
DOOR ID:
2125223
SAHV_1668
View Structure
12
1907637-1907772
(-)
FMN
1906466-1907510 (-)
ribD
SAHV_1756
Operon
DOOR ID:
348808
SAHV_1753
(ribH)
,
SAHV_1754
(ribA)
,
SAHV_1755
(ribB)
,
SAHV_1756
(ribD)
View Structure
13
1923709-1923820
(-)
SAM
1922406-1923603 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAHV_1775
Single gene
DOOR ID:
2125277
SAHV_1775
(metK)
View Structure
14
2228121-2228223
(-)
TPP
2227351-2228041 (-)
SAHV_2079
SAHV_2079
Operon
DOOR ID:
348880
SAHV_2076
(thiE)
,
SAHV_2077
(thiM)
,
SAHV_2078
(thiD)
,
SAHV_2079
View Structure
15
2283448-2283664
(-)
glmS
2281440-2283246 (-)
glmS
SAHV_2138
Single gene
DOOR ID:
2125413
SAHV_2138
(glmS)
View Structure
16
2452688-2452783
(-)
SAM
2451297-2452677 (-)
SAHV_2310
SAHV_2310
Single gene
DOOR ID:
2125485
SAHV_2310
View Structure
Genome:
Staphylococcus aureus subsp. aureus Mu3
(
NC_009782.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15956-16054";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16093-17083";i:10;s:1:"+";i:11;s:9:"SAHV_0012";i:12;s:0:"";i:13;s:9:"SAHV_0012";i:14;s:11:"Single gene";i:15;s:7:"2124605";i:16;s:9:"SAHV_0012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"430757-430859";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"431089-431668";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"SAHV_0385";i:14;s:6:"Operon";i:15;s:6:"348525";i:16;s:63:"SAHV_0385(xprT);SAHV_0386(pbuX);SAHV_0387(guaB);SAHV_0388(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"786885-786931";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"786046-786715";i:10;s:1:"-";i:11;s:9:"SAHV_0709";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"SAHV_0709";i:14;s:6:"Operon";i:15;s:6:"348594";i:16;s:29:"SAHV_0707;SAHV_0708;SAHV_0709";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"908655-908758";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"908846-909872";i:10;s:1:"+";i:11;s:9:"SAHV_0833";i:12;s:0:"";i:13;s:9:"SAHV_0833";i:14;s:6:"Operon";i:15;s:6:"348617";i:16;s:29:"SAHV_0833;SAHV_0834;SAHV_0835";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"996348-996438";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"997560-997821";i:10;s:1:"+";i:11;s:9:"SAHV_0950";i:12;s:0:"";i:13;s:9:"SAHV_0950";i:14;s:11:"Single gene";i:15;s:7:"2124977";i:16;s:9:"SAHV_0950";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1073627-1073733";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1073808-1074612";i:10;s:1:"+";i:11;s:9:"SAHV_1015";i:12;s:0:"";i:13;s:9:"SAHV_1015";i:14;s:11:"Single gene";i:15;s:7:"2125001";i:16;s:9:"SAHV_1015";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1133701-1133801";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1133048-1133624";i:10;s:1:"-";i:11;s:9:"SAHV_1069";i:12;s:0:"";i:13;s:9:"SAHV_1069";i:14;s:6:"Operon";i:15;s:6:"348662";i:16;s:29:"SAHV_1067;SAHV_1068;SAHV_1069";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1477215-1477390";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1477471-1478677";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:9:"SAHV_1381";i:14;s:6:"Operon";i:15;s:6:"348724";i:16;s:78:"SAHV_1381(lysC);SAHV_1382(asd);SAHV_1383(dapA);SAHV_1384(dapB);SAHV_1385(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1601610-1601744";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1601002-1601548";i:10;s:1:"-";i:11;s:9:"SAHV_1473";i:12;s:0:"";i:13;s:9:"SAHV_1473";i:14;s:11:"Single gene";i:15;s:7:"2125175";i:16;s:9:"SAHV_1473";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1654678-1654775";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1653511-1654603";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"SAHV_1524";i:14;s:6:"Operon";i:15;s:6:"348760";i:16;s:35:"SAHV_1522;SAHV_1523;SAHV_1524(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1791535-1791710";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1789896-1791390";i:10;s:1:"-";i:11;s:9:"SAHV_1668";i:12;s:0:"";i:13;s:9:"SAHV_1668";i:14;s:11:"Single gene";i:15;s:7:"2125223";i:16;s:9:"SAHV_1668";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1907637-1907772";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1906466-1907510";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:9:"SAHV_1756";i:14;s:6:"Operon";i:15;s:6:"348808";i:16;s:63:"SAHV_1753(ribH);SAHV_1754(ribA);SAHV_1755(ribB);SAHV_1756(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1923709-1923820";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1922406-1923603";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"SAHV_1775";i:14;s:11:"Single gene";i:15;s:7:"2125277";i:16;s:15:"SAHV_1775(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2228121-2228223";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2227351-2228041";i:10;s:1:"-";i:11;s:9:"SAHV_2079";i:12;s:0:"";i:13;s:9:"SAHV_2079";i:14;s:6:"Operon";i:15;s:6:"348880";i:16;s:57:"SAHV_2076(thiE);SAHV_2077(thiM);SAHV_2078(thiD);SAHV_2079";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2283448-2283664";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2281440-2283246";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:9:"SAHV_2138";i:14;s:11:"Single gene";i:15;s:7:"2125413";i:16;s:15:"SAHV_2138(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009782.1";i:2;s:39:"Staphylococcus aureus subsp. aureus Mu3";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2452688-2452783";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2451297-2452677";i:10;s:1:"-";i:11;s:9:"SAHV_2310";i:12;s:0:"";i:13;s:9:"SAHV_2310";i:14;s:11:"Single gene";i:15;s:7:"2125485";i:16;s:9:"SAHV_2310";i:17;s:0:"";i:18;s:15:"View Structure ";}}