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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
51839-52032
(-)
lysine
50372-51725 (-)
ESA_00067
Aspartokinase
ESA_00067
Single gene
DOOR ID:
2122704
ESA_00067
View Structure
2
145814-145861
(+)
mini-ykkC
145879-146197 (+)
ESA_00160
ESA_00160
Single gene
DOOR ID:
2122755
ESA_00160
View Structure
3
342103-342286
(+)
FMN
342393-343047 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ESA_00368
Single gene
DOOR ID:
2122847
ESA_00368
(ribB)
View Structure
4
1094512-1094608
(+)
TPP
1094641-1095439 (+)
ESA_01133
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ESA_01133
Operon
DOOR ID:
347811
ESA_01133,
ESA_01134
View Structure
5
1375429-1375601
(-)
yybP-ykoY
1374859-1375423 (-)
ESA_01430
Putative manganese efflux pump MntP
ESA_01430
Single gene
DOOR ID:
2123289
ESA_01430
View Structure
6
2519162-2519297
(-)
MOCO
2517650-2518163 (-)
ESA_02562
Molybdenum cofactor biosynthesis protein B
ESA_02562
Operon
DOOR ID:
348059
ESA_02558,
ESA_02559
(moaE)
,
ESA_02560,
ESA_02561,
ESA_02562,
ESA_02563
(moaA)
View Structure
7
3198294-3198395
(+)
TPP
3198427-3199411 (+)
tbpA
ESA_03271
Operon
DOOR ID:
348192
ESA_03271
(tbpA)
,
ESA_03272
(thiP)
,
ESA_03273
(thiQ)
View Structure
8
3617931-3618040
(+)
TPP
3618156-3620058 (+)
ESA_03679
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ESA_03679
Operon
DOOR ID:
348275
ESA_03679,
ESA_03680,
ESA_03681,
ESA_03682,
ESA_03683
(thiG)
,
ESA_03684
(thiH)
View Structure
9
3747085-3747270
(-)
cobalamin
3745164-3747030 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ESA_03800
Operon
DOOR ID:
348295
ESA_03799,
ESA_03800
(btuB)
View Structure
Genome:
Cronobacter sakazakii ATCC BAA-894
(
NC_009778.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009778.1";i:2;s:35:"Cronobacter sakazakii ATCC BAA-894 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1375429-1375601";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1374859-1375423";i:10;s:1:"-";i:11;s:9:"ESA_01430";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"ESA_01430";i:14;s:11:"Single gene";i:15;s:7:"2123289";i:16;s:9:"ESA_01430";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009778.1";i:2;s:35:"Cronobacter sakazakii ATCC BAA-894 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2519162-2519297";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2517650-2518163";i:10;s:1:"-";i:11;s:9:"ESA_02562";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"ESA_02562";i:14;s:6:"Operon";i:15;s:6:"348059";i:16;s:71:"ESA_02558;ESA_02559(moaE);ESA_02560;ESA_02561;ESA_02562;ESA_02563(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009778.1";i:2;s:35:"Cronobacter sakazakii ATCC BAA-894 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3198294-3198395";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3198427-3199411";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:9:"ESA_03271";i:14;s:6:"Operon";i:15;s:6:"348192";i:16;s:47:"ESA_03271(tbpA);ESA_03272(thiP);ESA_03273(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009778.1";i:2;s:35:"Cronobacter sakazakii ATCC BAA-894 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3617931-3618040";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3618156-3620058";i:10;s:1:"+";i:11;s:9:"ESA_03679";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"ESA_03679";i:14;s:6:"Operon";i:15;s:6:"348275";i:16;s:71:"ESA_03679;ESA_03680;ESA_03681;ESA_03682;ESA_03683(thiG);ESA_03684(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009778.1";i:2;s:35:"Cronobacter sakazakii ATCC BAA-894 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3747085-3747270";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3745164-3747030";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"ESA_03800";i:14;s:6:"Operon";i:15;s:6:"348295";i:16;s:25:"ESA_03799;ESA_03800(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
