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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
268646-268818
(-)
cobalamin
267697-268588 (-)
Fnod_0257
Periplasmic binding protein
Fnod_0257
Operon
DOOR ID:
342844
Fnod_0256,
Fnod_0257
View Structure
2
338574-338685
(+)
TPP
338763-339741 (+)
Fnod_0311
ABC transporter; periplasmic binding protein; thiB subfamily
Fnod_0311
Single gene
DOOR ID:
2113809
Fnod_0311
View Structure
3
1475634-1475809
(+)
cobalamin
1475885-1476932 (+)
Fnod_1365
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
Fnod_1365
Operon
DOOR ID:
343070
Fnod_1365,
Fnod_1366,
Fnod_1367,
Fnod_1368,
Fnod_1369,
Fnod_1370,
Fnod_1371,
Fnod_1372,
Fnod_1373
View Structure
4
1485865-1486047
(+)
cobalamin
1486126-1487194 (+)
Fnod_1378
Succinate--CoA ligase (ADP-forming)
Fnod_1378
Operon
DOOR ID:
343071
Fnod_1378,
Fnod_1379,
Fnod_1380
View Structure
5
1532327-1532468
(+)
FMN
1532566-1533664 (+)
Fnod_1415
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Fnod_1415
Operon
DOOR ID:
343078
Fnod_1415,
Fnod_1416,
Fnod_1417,
Fnod_1418
(ribH)
View Structure
6
1540195-1540307
(-)
TPP
1539258-1540092 (-)
Fnod_1422
Thiamine thiazole synthase
Fnod_1422
Operon
DOOR ID:
343080
Fnod_1421,
Fnod_1422
View Structure
Genome:
Fervidobacterium nodosum Rt17-B1
(
NC_009718.1
);
Phylum:
Thermotogae
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