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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
156289-156551
(+)
cobalamin
156619-158512 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YpsIP31758_0142
Operon
DOOR ID:
340804
YpsIP31758_0142
(btuB)
,
YpsIP31758_0143
(murI)
View Structure
2
668049-668238
(+)
FMN
668480-669134 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YpsIP31758_0567
Single gene
DOOR ID:
2111284
YpsIP31758_0567
(ribB)
View Structure
3
1414415-1414519
(+)
TPP
1414642-1415443 (+)
thiD
Phosphomethylpyrimidine kinase
YpsIP31758_1203
Single gene
DOOR ID:
2110769
YpsIP31758_1203
(thiD)
View Structure
4
2672111-2672310
(+)
yybP-ykoY
2672320-2672890 (+)
YpsIP31758_2372
Putative manganese efflux pump MntP
YpsIP31758_2372
Single gene
DOOR ID:
2110624
YpsIP31758_2372
View Structure
5
3203598-3203744
(-)
MOCO
3201928-3202408 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YpsIP31758_2835
Operon
DOOR ID:
341291
YpsIP31758_2833
(moaE)
,
YpsIP31758_2834
(moaD)
,
YpsIP31758_2835
(moaC)
View Structure
6
3329098-3329161
(+)
fluoride
3329261-3329645 (+)
crcB
Putative fluoride ion transporter CrcB
YpsIP31758_2957
Single gene
DOOR ID:
2110695
YpsIP31758_2957
(crcB)
View Structure
7
4139449-4139495
(-)
mini-ykkC
4139114-4139429 (-)
sugE
YpsIP31758_3671
Single gene
DOOR ID:
2110005
YpsIP31758_3671
(sugE)
View Structure
8
4338760-4338885
(+)
TPP
4339017-4341063 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YpsIP31758_3853
Operon
DOOR ID:
341483
YpsIP31758_3853
(thiC)
,
YpsIP31758_3854
(thiE)
,
YpsIP31758_3855
(thiF)
View Structure
Genome:
Yersinia pseudotuberculosis IP 31758
(
NC_009708.1
);
Phylum:
Gammaproteobacteria
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