About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
37849-38001
(-)
FMN
36749-37604 (-)
Oant_0035
Riboflavin transporter
Oant_0035
Single gene
DOOR ID:
2097307
Oant_0035
View Structure
2
296325-296481
(-)
TPP
295365-296253 (-)
Oant_0285
Phosphomethylpyrimidine kinase
Oant_0285
Operon
DOOR ID:
335117
Oant_0278,
Oant_0279,
Oant_0280,
Oant_0281
(thiE)
,
Oant_0282
(thiG)
,
Oant_0283,
Oant_0284,
Oant_0285
View Structure
3
425394-425473
(-)
sam-alpha
424108-425302 (-)
Oant_0398
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Oant_0398
Single gene
DOOR ID:
2097449
Oant_0398
View Structure
4
1203651-1203765
(-)
TPP
1202604-1203609 (-)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Oant_1142
Operon
DOOR ID:
335287
Oant_1140,
Oant_1141
(thiP)
,
Oant_1142
(tbpA)
View Structure
5
1918958-1919182
(+)
cobalamin
1919336-1921202 (+)
Oant_1826
TonB-dependent receptor
Oant_1826
Operon
DOOR ID:
335421
Oant_1826,
Oant_1827,
Oant_1828,
Oant_1829
View Structure
6
1975335-1975573
(+)
cobalamin
1975623-1975812 (+)
Oant_1873
Cobalt transporter; subunit CbtB
Oant_1873
Operon
DOOR ID:
335428
Oant_1873,
Oant_1874,
Oant_1875
(cobU)
,
Oant_1876,
Oant_1877
(cobN)
,
Oant_1878,
Oant_1879
View Structure
7
2643520-2643564
(+)
mini-ykkC
2643578-2644328 (+)
Oant_2514
Oant_2514
Single gene
DOOR ID:
2098378
Oant_2514
View Structure
8
2644355-2644399
(+)
mini-ykkC
2644427-2644745 (+)
Oant_2515
Oant_2515
Single gene
DOOR ID:
2098379
Oant_2515
View Structure
Genome:
Ochrobactrum anthropi ATCC 49188 chromosome I
(
NC_009667.1
);
Phylum:
Alphaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:11:"37849-38001";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:11:"36749-37604";i:10;s:1:"-";i:11;s:9:"Oant_0035";i:12;s:22:"Riboflavin transporter";i:13;s:9:"Oant_0035";i:14;s:11:"Single gene";i:15;s:7:"2097307";i:16;s:9:"Oant_0035";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"296325-296481";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"295365-296253";i:10;s:1:"-";i:11;s:9:"Oant_0285";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"Oant_0285";i:14;s:6:"Operon";i:15;s:6:"335117";i:16;s:91:"Oant_0278;Oant_0279;Oant_0280;Oant_0281(thiE);Oant_0282(thiG);Oant_0283;Oant_0284;Oant_0285";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"425394-425473";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"424108-425302";i:10;s:1:"-";i:11;s:9:"Oant_0398";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"Oant_0398";i:14;s:11:"Single gene";i:15;s:7:"2097449";i:16;s:9:"Oant_0398";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1203651-1203765";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1202604-1203609";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:9:"Oant_1142";i:14;s:6:"Operon";i:15;s:6:"335287";i:16;s:41:"Oant_1140;Oant_1141(thiP);Oant_1142(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1918958-1919182";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1919336-1921202";i:10;s:1:"+";i:11;s:9:"Oant_1826";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Oant_1826";i:14;s:6:"Operon";i:15;s:6:"335421";i:16;s:39:"Oant_1826;Oant_1827;Oant_1828;Oant_1829";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1975335-1975573";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1975623-1975812";i:10;s:1:"+";i:11;s:9:"Oant_1873";i:12;s:32:"Cobalt transporter; subunit CbtB";i:13;s:9:"Oant_1873";i:14;s:6:"Operon";i:15;s:6:"335428";i:16;s:81:"Oant_1873;Oant_1874;Oant_1875(cobU);Oant_1876;Oant_1877(cobN);Oant_1878;Oant_1879";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2643520-2643564";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2643578-2644328";i:10;s:1:"+";i:11;s:9:"Oant_2514";i:12;s:0:"";i:13;s:9:"Oant_2514";i:14;s:11:"Single gene";i:15;s:7:"2098378";i:16;s:9:"Oant_2514";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009667.1";i:2;s:45:"Ochrobactrum anthropi ATCC 49188 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2644355-2644399";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2644427-2644745";i:10;s:1:"+";i:11;s:9:"Oant_2515";i:12;s:0:"";i:13;s:9:"Oant_2515";i:14;s:11:"Single gene";i:15;s:7:"2098379";i:16;s:9:"Oant_2515";i:17;s:0:"";i:18;s:15:"View Structure ";}}