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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
160832-161061
(-)
FMN
159988-160642 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Shew185_0134
Single gene
DOOR ID:
2095226
Shew185_0134
(ribB)
View Structure
2
319215-319348
(+)
MOCO
320411-320888 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
Shew185_0278
Operon
DOOR ID:
334366
Shew185_0277
(moaA)
,
Shew185_0278
(moaC)
View Structure
3
986235-986375
(+)
glycine
986625-987984 (+)
Shew185_0834
Shew185_0834
Single gene
DOOR ID:
2095533
Shew185_0834
View Structure
4
1167678-1167844
(+)
cobalamin
1167943-1168837 (+)
Shew185_0975
Shew185_0975
Operon
DOOR ID:
334476
Shew185_0975,
Shew185_0976
View Structure
5
2155539-2155664
(+)
TPP
2155718-2157953 (+)
Shew185_1794
Shew185_1794
Single gene
DOOR ID:
2096051
Shew185_1794
View Structure
6
2774639-2774737
(-)
TPP
2772313-2774437 (-)
Shew185_2323
Shew185_2323
Operon
DOOR ID:
334710
Shew185_2318
(thiH)
,
Shew185_2319
(thiG)
,
Shew185_2320,
Shew185_2321,
Shew185_2322,
Shew185_2323
View Structure
7
3410111-3410159
(-)
mini-ykkC
3409780-3410095 (-)
Shew185_2843
Shew185_2843
Single gene
DOOR ID:
2096548
Shew185_2843
View Structure
8
3440014-3440210
(-)
lysine
3438365-3439934 (-)
Shew185_2864
Shew185_2864
Single gene
DOOR ID:
2096561
Shew185_2864
View Structure
9
3685606-3685694
(-)
c-di-GMP-I
3682884-3685491 (-)
Shew185_3093
Shew185_3093
single gene
DOOR ID:
2096638
Shew185_3093
View Structure
10
4117645-4117744
(-)
c-di-GMP-I
4116066-4117512 (-)
Shew185_3466
Shew185_3466
single gene
DOOR ID:
2096816
Shew185_3466
View Structure
11
4117969-4118072
(+)
yybP-ykoY
4118155-4118710 (+)
Shew185_3467
Shew185_3467
Single gene
DOOR ID:
2096817
Shew185_3467
View Structure
12
4330052-4330285
(-)
cobalamin
4327981-4329943 (-)
Shew185_3644
Shew185_3644
Single gene
DOOR ID:
2096921
Shew185_3644
View Structure
13
4414809-4414983
(-)
lysine
4413302-4414658 (-)
Shew185_3717
Shew185_3717
Operon
DOOR ID:
334946
Shew185_3716,
Shew185_3717
View Structure
Genome:
Shewanella baltica OS185
(
NC_009665.1
);
Phylum:
Gammaproteobacteria
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