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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
194518-194695
(+)
FMN
194813-195743 (+)
Mmwyl1_0168
Mmwyl1_0168
Single gene
DOOR ID:
2086489
Mmwyl1_0168
View Structure
2
296287-296481
(+)
cobalamin
296542-298336 (+)
Mmwyl1_0250
TonB-dependent receptor plug
Mmwyl1_0250
Operon
DOOR ID:
329121
Mmwyl1_0250,
Mmwyl1_0251,
Mmwyl1_0252,
Mmwyl1_0253
View Structure
3
1273916-1273962
(+)
mini-ykkC
1273979-1274297 (+)
Mmwyl1_1141
Mmwyl1_1141
Single gene
DOOR ID:
2086892
Mmwyl1_1141
View Structure
4
1531815-1531976
(-)
FMN
1531201-1531693 (-)
Mmwyl1_1372
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Mmwyl1_1372
Single gene
DOOR ID:
2086986
Mmwyl1_1372
View Structure
5
1554914-1555142
(+)
cobalamin
1555224-1555896 (+)
Mmwyl1_1388
Mmwyl1_1388
Single gene
DOOR ID:
2086995
Mmwyl1_1388
View Structure
6
2705246-2705350
(-)
TPP
2703021-2705064 (-)
Mmwyl1_2392
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Mmwyl1_2392
Operon
DOOR ID:
329535
Mmwyl1_2388,
Mmwyl1_2389,
Mmwyl1_2390,
Mmwyl1_2391,
Mmwyl1_2392
View Structure
7
3916310-3916429
(-)
TPP
3915216-3916230 (-)
Mmwyl1_3472
Thiamine ABC transporter; periplasmic binding protein
Mmwyl1_3472
Single gene
DOOR ID:
2087800
Mmwyl1_3472
View Structure
8
4903120-4903195
(+)
sam-alpha
4903282-4904446 (+)
Mmwyl1_4320
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Mmwyl1_4320
Single gene
DOOR ID:
2088160
Mmwyl1_4320
View Structure
9
4923334-4923527
(+)
yybP-ykoY
4923536-4924103 (+)
Mmwyl1_4337
Mmwyl1_4337
Single gene
DOOR ID:
2088166
Mmwyl1_4337
View Structure
Genome:
Marinomonas sp. MWYL1
(
NC_009654.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"194518-194695";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"194813-195743";i:10;s:1:"+";i:11;s:11:"Mmwyl1_0168";i:12;s:0:"";i:13;s:11:"Mmwyl1_0168";i:14;s:11:"Single gene";i:15;s:7:"2086489";i:16;s:11:"Mmwyl1_0168";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"296287-296481";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"296542-298336";i:10;s:1:"+";i:11;s:11:"Mmwyl1_0250";i:12;s:28:"TonB-dependent receptor plug";i:13;s:11:"Mmwyl1_0250";i:14;s:6:"Operon";i:15;s:6:"329121";i:16;s:47:"Mmwyl1_0250;Mmwyl1_0251;Mmwyl1_0252;Mmwyl1_0253";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1273916-1273962";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1273979-1274297";i:10;s:1:"+";i:11;s:11:"Mmwyl1_1141";i:12;s:0:"";i:13;s:11:"Mmwyl1_1141";i:14;s:11:"Single gene";i:15;s:7:"2086892";i:16;s:11:"Mmwyl1_1141";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1531815-1531976";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1531201-1531693";i:10;s:1:"-";i:11;s:11:"Mmwyl1_1372";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"Mmwyl1_1372";i:14;s:11:"Single gene";i:15;s:7:"2086986";i:16;s:11:"Mmwyl1_1372";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1554914-1555142";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1555224-1555896";i:10;s:1:"+";i:11;s:11:"Mmwyl1_1388";i:12;s:0:"";i:13;s:11:"Mmwyl1_1388";i:14;s:11:"Single gene";i:15;s:7:"2086995";i:16;s:11:"Mmwyl1_1388";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2705246-2705350";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2703021-2705064";i:10;s:1:"-";i:11;s:11:"Mmwyl1_2392";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"Mmwyl1_2392";i:14;s:6:"Operon";i:15;s:6:"329535";i:16;s:59:"Mmwyl1_2388;Mmwyl1_2389;Mmwyl1_2390;Mmwyl1_2391;Mmwyl1_2392";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3916310-3916429";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3915216-3916230";i:10;s:1:"-";i:11;s:11:"Mmwyl1_3472";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:11:"Mmwyl1_3472";i:14;s:11:"Single gene";i:15;s:7:"2087800";i:16;s:11:"Mmwyl1_3472";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4903120-4903195";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4903282-4904446";i:10;s:1:"+";i:11;s:11:"Mmwyl1_4320";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:11:"Mmwyl1_4320";i:14;s:11:"Single gene";i:15;s:7:"2088160";i:16;s:11:"Mmwyl1_4320";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009654.1";i:2;s:22:"Marinomonas sp. MWYL1 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4923334-4923527";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4923536-4924103";i:10;s:1:"+";i:11;s:11:"Mmwyl1_4337";i:12;s:0:"";i:13;s:11:"Mmwyl1_4337";i:14;s:11:"Single gene";i:15;s:7:"2088166";i:16;s:11:"Mmwyl1_4337";i:17;s:0:"";i:18;s:15:"View Structure ";}}