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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79060-79189
(-)
TPP
78042-79026 (-)
tbpA
Thiamin-binding periplasmic protein
KPN_00067
Operon
DOOR ID:
328059
KPN_00065
(thiQ)
,
KPN_00066
(thiP)
,
KPN_00067
(tbpA)
View Structure
2
905889-906027
(+)
MOCO
907027-907540 (+)
moaB
Molybdenum cofactor biosynthesis protein B
KPN_00811
Operon
DOOR ID:
328209
KPN_00810
(moaA)
,
KPN_00811
(moaB)
,
KPN_00812
(moaC)
,
KPN_00813
(moaD)
,
KPN_00814
(moaE)
,
KPN_00815
(ybhL)
View Structure
3
1075747-1075801
(-)
fluoride
1070753-1075202 (+)
mukB
Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)
KPN_00951
Operon
DOOR ID:
328239
KPN_00948
(smtA)
,
KPN_00949
(mukF)
,
KPN_00950
(mukE)
,
KPN_00951
(mukB)
View Structure
4
1985255-1985356
(+)
TPP
1985424-1986120 (+)
KPN_01799
Aminopyrimidine aminohydrolase
KPN_01799
Operon
DOOR ID:
328382
KPN_01799,
KPN_01800,
KPN_01801
View Structure
5
2559997-2560099
(+)
yybP-ykoY
2560252-2560783 (+)
yebN
Putative manganese efflux pump MntP
KPN_02337
Single gene
DOOR ID:
2085292
KPN_02337
(yebN)
View Structure
6
2797685-2797782
(-)
TPP
2796876-2797650 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
KPN_02551
Operon
DOOR ID:
328514
KPN_02550
(thiD)
,
KPN_02551
(thiM)
View Structure
7
3513100-3513278
(-)
cobalamin
3511630-3513085 (-)
cbiA
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
KPN_03200
Operon
DOOR ID:
328646
KPN_03182
(cobT)
,
KPN_03183
(cobU)
,
KPN_03184
(cbiP)
,
KPN_03185
(cbiO)
,
KPN_03186
(cboQ)
,
KPN_03187
(cbiN)
,
KPN_03188
(cbiM)
,
KPN_03189
(cbiL)
,
KPN_03190
(cbiK)
,
KPN_03191
(cbiJ)
,
KPN_03192
(cbiH)
,
KPN_03193
(cbiG)
,
KPN_03194
(cbiF)
,
KPN_03195
(cbiT)
,
KPN_03196
(cbiE)
,
KPN_03197
(cbiD)
,
KPN_03198
(cbiC)
,
KPN_03199
(cobD)
,
KPN_03200
(cbiA)
View Structure
8
3778913-3779064
(-)
FMN
3778153-3778807 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
KPN_03454
Single gene
DOOR ID:
2085728
KPN_03454
(ribB)
View Structure
9
4212343-4212524
(+)
ykoK
4212581-4213595 (+)
KPN_03856
Putative Mg/Co/Ni transporter MgtE
KPN_03856
Single gene
DOOR ID:
2085856
KPN_03856
View Structure
10
4660061-4660248
(+)
cobalamin
4660312-4662169 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
KPN_04255
Operon
DOOR ID:
328868
KPN_04255
(btuB)
,
KPN_04256
(murI)
View Structure
11
4788287-4788411
(-)
TPP
4786305-4788201 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
KPN_04376
Operon
DOOR ID:
328890
KPN_04371
(thiH)
,
KPN_04372
(thiG)
,
KPN_04373
(thiS)
,
KPN_04374
(thiF)
,
KPN_04375
(thiE)
,
KPN_04376
(thiC)
View Structure
12
4829675-4829910
(-)
lysine
4828145-4829495 (-)
lysC
Aspartokinase
KPN_04412
Single gene
DOOR ID:
2086058
KPN_04412
(lysC)
View Structure
13
4978448-4978492
(+)
mini-ykkC
4978505-4978823 (+)
sugE
KPN_04548
Single gene
DOOR ID:
2086134
KPN_04548
(sugE)
View Structure
14
5085745-5085861
(+)
Mg sensor
5085959-5088668 (+)
mgtA
Mg2+ transport ATPase; P-type 1
KPN_04654
Single gene
DOOR ID:
2086177
KPN_04654
(mgtA)
View Structure
Genome:
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
(
NC_009648.1
);
Phylum:
Gammaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"79060-79189";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"78042-79026";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:35:"Thiamin-binding periplasmic protein";i:13;s:9:"KPN_00067";i:14;s:6:"Operon";i:15;s:6:"328059";i:16;s:47:"KPN_00065(thiQ);KPN_00066(thiP);KPN_00067(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"905889-906027";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"907027-907540";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"KPN_00811";i:14;s:6:"Operon";i:15;s:6:"328209";i:16;s:95:"KPN_00810(moaA);KPN_00811(moaB);KPN_00812(moaC);KPN_00813(moaD);KPN_00814(moaE);KPN_00815(ybhL)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1075747-1075801";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1070753-1075202";i:10;s:1:"+";i:11;s:4:"mukB";i:12;s:88:"Chromosome partition protein MukB (Structural maintenance of chromosome-related protein)";i:13;s:9:"KPN_00951";i:14;s:6:"Operon";i:15;s:6:"328239";i:16;s:63:"KPN_00948(smtA);KPN_00949(mukF);KPN_00950(mukE);KPN_00951(mukB)";i:17;s:126:"cell cycle [GO:0007049]; cell division [GO:0051301]; chromosome condensation [GO:0030261]; chromosome segregation [GO:0007059]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1985255-1985356";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1985424-1986120";i:10;s:1:"+";i:11;s:9:"KPN_01799";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"KPN_01799";i:14;s:6:"Operon";i:15;s:6:"328382";i:16;s:29:"KPN_01799;KPN_01800;KPN_01801";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2559997-2560099";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2560252-2560783";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"KPN_02337";i:14;s:11:"Single gene";i:15;s:7:"2085292";i:16;s:15:"KPN_02337(yebN)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2797685-2797782";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2796876-2797650";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"KPN_02551";i:14;s:6:"Operon";i:15;s:6:"328514";i:16;s:31:"KPN_02550(thiD);KPN_02551(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3513100-3513278";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3511630-3513085";i:10;s:1:"-";i:11;s:4:"cbiA";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"KPN_03200";i:14;s:6:"Operon";i:15;s:6:"328646";i:16;s:303:"KPN_03182(cobT);KPN_03183(cobU);KPN_03184(cbiP);KPN_03185(cbiO);KPN_03186(cboQ);KPN_03187(cbiN);KPN_03188(cbiM);KPN_03189(cbiL);KPN_03190(cbiK);KPN_03191(cbiJ);KPN_03192(cbiH);KPN_03193(cbiG);KPN_03194(cbiF);KPN_03195(cbiT);KPN_03196(cbiE);KPN_03197(cbiD);KPN_03198(cbiC);KPN_03199(cobD);KPN_03200(cbiA)";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3778913-3779064";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3778153-3778807";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"KPN_03454";i:14;s:11:"Single gene";i:15;s:7:"2085728";i:16;s:15:"KPN_03454(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4212343-4212524";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"4212581-4213595";i:10;s:1:"+";i:11;s:9:"KPN_03856";i:12;s:34:"Putative Mg/Co/Ni transporter MgtE";i:13;s:9:"KPN_03856";i:14;s:11:"Single gene";i:15;s:7:"2085856";i:16;s:9:"KPN_03856";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4660061-4660248";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4660312-4662169";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"KPN_04255";i:14;s:6:"Operon";i:15;s:6:"328868";i:16;s:31:"KPN_04255(btuB);KPN_04256(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4788287-4788411";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4786305-4788201";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"KPN_04376";i:14;s:6:"Operon";i:15;s:6:"328890";i:16;s:95:"KPN_04371(thiH);KPN_04372(thiG);KPN_04373(thiS);KPN_04374(thiF);KPN_04375(thiE);KPN_04376(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4829675-4829910";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4828145-4829495";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"KPN_04412";i:14;s:11:"Single gene";i:15;s:7:"2086058";i:16;s:15:"KPN_04412(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4978448-4978492";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4978505-4978823";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"KPN_04548";i:14;s:11:"Single gene";i:15;s:7:"2086134";i:16;s:15:"KPN_04548(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009648.1";i:2;s:50:"Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5085745-5085861";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5085959-5088668";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:31:"Mg2+ transport ATPase; P-type 1";i:13;s:9:"KPN_04654";i:14;s:11:"Single gene";i:15;s:7:"2086177";i:16;s:15:"KPN_04654(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}