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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15955-16053
(+)
SAM
16112-17081 (+)
NWMN_0011
NWMN_0011
Single gene
DOOR ID:
2083190
NWMN_0011
View Structure
2
425734-425836
(+)
purine
426066-426645 (+)
NWMN_0378
Xanthine phosphoribosyltransferase (XPRTase) (2)
NWMN_0378
Operon
DOOR ID:
327608
NWMN_0378,
NWMN_0379
(pbuX)
,
NWMN_0380
(guaB)
,
NWMN_0381
(guaA)
View Structure
3
762530-762576
(-)
PreQ1
761691-762360 (-)
NWMN_0681
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
NWMN_0681
Operon
DOOR ID:
327674
NWMN_0679,
NWMN_0680,
NWMN_0681
View Structure
4
869718-869821
(+)
SAM
869909-870935 (+)
NWMN_0780
Methionine import ATP-binding protein MetN
NWMN_0780
Operon
DOOR ID:
327691
NWMN_0780,
NWMN_0781,
NWMN_0782
View Structure
5
911231-911321
(+)
preQ1-II
912327-912705 (+)
NWMN_0825
NWMN_0825
Single gene
DOOR ID:
2083538
NWMN_0825
View Structure
6
988674-988780
(+)
yybP-ykoY
988855-989659 (+)
NWMN_0891
NWMN_0891
Single gene
DOOR ID:
2083562
NWMN_0891
View Structure
7
1050460-1050560
(-)
TPP
1049807-1050383 (-)
NWMN_0945
NWMN_0945
Operon
DOOR ID:
327724
NWMN_0943,
NWMN_0944,
NWMN_0945
View Structure
8
1436526-1436701
(+)
lysine
1436782-1437988 (+)
lysC
Aspartokinase
NWMN_1304
Operon
DOOR ID:
327793
NWMN_1304
(lysC)
,
NWMN_1305
(asd)
,
NWMN_1306
(dapA)
,
NWMN_1307
(dapB)
,
NWMN_1308
(dapD)
View Structure
9
1561536-1561670
(-)
FMN
1560928-1561474 (-)
NWMN_1393
Riboflavin transporter
NWMN_1393
Single gene
DOOR ID:
2083746
NWMN_1393
View Structure
10
1612782-1612879
(-)
glycine
1611615-1612707 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
NWMN_1441
Operon
DOOR ID:
327828
NWMN_1439
(gcvPB)
,
NWMN_1440
(gcvPA)
,
NWMN_1441
(gcvT)
View Structure
11
1742274-1742449
(-)
lysine
1740635-1742129 (-)
lysP
Lysine-specific permease
NWMN_1575
Single gene
DOOR ID:
2083789
NWMN_1575
(lysP)
View Structure
12
1858928-1859063
(-)
FMN
1857757-1858801 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
NWMN_1662
Operon
DOOR ID:
327875
NWMN_1659
(ribH)
,
NWMN_1660
(ribA)
,
NWMN_1661
(ribB)
,
NWMN_1662
(ribD)
View Structure
13
1875707-1875817
(-)
SAM
1874407-1875601 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
NWMN_1680
Single gene
DOOR ID:
2083842
NWMN_1680
(metK)
View Structure
14
2219975-2220077
(-)
TPP
2219205-2219895 (-)
NWMN_1998
Aminopyrimidine aminohydrolase
NWMN_1998
Operon
DOOR ID:
327945
NWMN_1995
(thiE)
,
NWMN_1996
(thiM)
,
NWMN_1997
(thiD)
,
NWMN_1998
View Structure
15
2276717-2276933
(-)
glmS
2274709-2276515 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
NWMN_2056
Single gene
DOOR ID:
2083990
NWMN_2056
(glmS)
View Structure
16
2449288-2449383
(-)
SAM
2447897-2449277 (-)
NWMN_2227
Na+/H+ antiporter family protein
NWMN_2227
Single gene
DOOR ID:
2084057
NWMN_2227
View Structure
Genome:
Staphylococcus aureus subsp. aureus str. Newman
(
NC_009641.1
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15955-16053";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16112-17081";i:10;s:1:"+";i:11;s:9:"NWMN_0011";i:12;s:0:"";i:13;s:9:"NWMN_0011";i:14;s:11:"Single gene";i:15;s:7:"2083190";i:16;s:9:"NWMN_0011";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"425734-425836";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"426066-426645";i:10;s:1:"+";i:11;s:9:"NWMN_0378";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"NWMN_0378";i:14;s:6:"Operon";i:15;s:6:"327608";i:16;s:57:"NWMN_0378;NWMN_0379(pbuX);NWMN_0380(guaB);NWMN_0381(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"762530-762576";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"761691-762360";i:10;s:1:"-";i:11;s:9:"NWMN_0681";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"NWMN_0681";i:14;s:6:"Operon";i:15;s:6:"327674";i:16;s:29:"NWMN_0679;NWMN_0680;NWMN_0681";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"869718-869821";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"869909-870935";i:10;s:1:"+";i:11;s:9:"NWMN_0780";i:12;s:43:"Methionine import ATP-binding protein MetN ";i:13;s:9:"NWMN_0780";i:14;s:6:"Operon";i:15;s:6:"327691";i:16;s:29:"NWMN_0780;NWMN_0781;NWMN_0782";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"911231-911321";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"912327-912705";i:10;s:1:"+";i:11;s:9:"NWMN_0825";i:12;s:0:"";i:13;s:9:"NWMN_0825";i:14;s:11:"Single gene";i:15;s:7:"2083538";i:16;s:9:"NWMN_0825";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"988674-988780";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"988855-989659";i:10;s:1:"+";i:11;s:9:"NWMN_0891";i:12;s:0:"";i:13;s:9:"NWMN_0891";i:14;s:11:"Single gene";i:15;s:7:"2083562";i:16;s:9:"NWMN_0891";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1050460-1050560";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1049807-1050383";i:10;s:1:"-";i:11;s:9:"NWMN_0945";i:12;s:0:"";i:13;s:9:"NWMN_0945";i:14;s:6:"Operon";i:15;s:6:"327724";i:16;s:29:"NWMN_0943;NWMN_0944;NWMN_0945";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1436526-1436701";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1436782-1437988";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"NWMN_1304";i:14;s:6:"Operon";i:15;s:6:"327793";i:16;s:78:"NWMN_1304(lysC);NWMN_1305(asd);NWMN_1306(dapA);NWMN_1307(dapB);NWMN_1308(dapD)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1561536-1561670";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1560928-1561474";i:10;s:1:"-";i:11;s:9:"NWMN_1393";i:12;s:22:"Riboflavin transporter";i:13;s:9:"NWMN_1393";i:14;s:11:"Single gene";i:15;s:7:"2083746";i:16;s:9:"NWMN_1393";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1612782-1612879";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1611615-1612707";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"NWMN_1441";i:14;s:6:"Operon";i:15;s:6:"327828";i:16;s:49:"NWMN_1439(gcvPB);NWMN_1440(gcvPA);NWMN_1441(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1742274-1742449";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1740635-1742129";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:24:"Lysine-specific permease";i:13;s:9:"NWMN_1575";i:14;s:11:"Single gene";i:15;s:7:"2083789";i:16;s:15:"NWMN_1575(lysP)";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1858928-1859063";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1857757-1858801";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"NWMN_1662";i:14;s:6:"Operon";i:15;s:6:"327875";i:16;s:63:"NWMN_1659(ribH);NWMN_1660(ribA);NWMN_1661(ribB);NWMN_1662(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1875707-1875817";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1874407-1875601";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"NWMN_1680";i:14;s:11:"Single gene";i:15;s:7:"2083842";i:16;s:15:"NWMN_1680(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2219975-2220077";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2219205-2219895";i:10;s:1:"-";i:11;s:9:"NWMN_1998";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"NWMN_1998";i:14;s:6:"Operon";i:15;s:6:"327945";i:16;s:57:"NWMN_1995(thiE);NWMN_1996(thiM);NWMN_1997(thiD);NWMN_1998";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2276717-2276933";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2274709-2276515";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"NWMN_2056";i:14;s:11:"Single gene";i:15;s:7:"2083990";i:16;s:15:"NWMN_2056(glmS)";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009641.1";i:2;s:48:"Staphylococcus aureus subsp. aureus str. Newman ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2449288-2449383";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2447897-2449277";i:10;s:1:"-";i:11;s:9:"NWMN_2227";i:12;s:32:"Na+/H+ antiporter family protein";i:13;s:9:"NWMN_2227";i:14;s:11:"Single gene";i:15;s:7:"2084057";i:16;s:9:"NWMN_2227";i:17;s:0:"";i:18;s:15:"View Structure ";}}