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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
148161-148239
(-)
sam-alpha
146932-148117 (-)
Smed_0133
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Smed_0133
Single gene
DOOR ID:
2081016
Smed_0133
View Structure
2
523907-524111
(+)
cobalamin
524223-525468 (+)
Smed_0483
Rieske (2Fe-2S) domain protein
Smed_0483
Operon
DOOR ID:
326575
Smed_0483,
Smed_0484
View Structure
3
1265409-1265496
(-)
glycine
1264126-1265266 (-)
gcvT
Glycine cleavage system T protein
Smed_1184
Operon
DOOR ID:
326707
Smed_1182,
Smed_1183,
Smed_1184
(gcvT)
View Structure
4
1656988-1657203
(-)
cobalamin
1656247-1656943 (-)
Smed_1562
Cob(II)yrinic acid a;c-diamide reductase
Smed_1562
Single gene
DOOR ID:
2081645
Smed_1562
View Structure
5
1843858-1844272
(-)
cobalamin
1843206-1843734 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Smed_1761
Operon
DOOR ID:
326806
Smed_1757,
Smed_1758,
Smed_1759
(cobN)
,
Smed_1760,
Smed_1761
(cobU)
View Structure
6
2204958-2205122
(+)
FMN
2205158-2205686 (+)
Smed_2138
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Smed_2138
Single gene
DOOR ID:
2081912
Smed_2138
View Structure
7
3178367-3178444
(+)
sam-alpha
3178463-3179435 (+)
Smed_3030
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Smed_3030
Operon
DOOR ID:
327052
Smed_3030,
Smed_3031
View Structure
8
3252666-3252780
(+)
TPP
3252827-3253856 (+)
tbpA
ABC transporter; periplasmic binding protein; thiB subfamily
Smed_3107
Operon
DOOR ID:
327069
Smed_3107
(tbpA)
,
Smed_3108
(thiP)
,
Smed_3109
View Structure
Genome:
Sinorhizobium medicae WSM419
(
NC_009636.1
);
Phylum:
Alphaproteobacteria
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