Genome: Alkaliphilus metalliredigens QYMF (NC_009633.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 17495-17543 (+)PreQ117547-18012 (+)Amet_0013

Amet_0013Single gene

DOOR ID: 2077607		Amet_0013 View Structure
2 79239-79421 (+)cobalamin79683-80958 (+)Amet_0058

Glutamyl-tRNA reductase (GluTR) (0)		Amet_0058Operon

DOOR ID: 325014		Amet_0058,
Amet_0059,
Amet_0060,
Amet_0061,
Amet_0062,
Amet_0063		 View Structure
3 86468-86650 (+)cobalamin86835-87210 (+)Amet_0064

Cobalamin (Vitamin B12) biosynthesis CbiX protein		Amet_0064Single gene

DOOR ID: 2077632		Amet_0064 View Structure
4 477062-477242 (-)cobalamin475913-476963 (-)Amet_0464

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Amet_0464Single gene

DOOR ID: 2077765		Amet_0464 View Structure
5 480071-480160 (+)c-di-GMP-I480587-481895 (+)Amet_0467

Methyl-accepting chemotaxis sensory transducer		Amet_0467operon

DOOR ID: 325093		Amet_0467,
Amet_0468		 View Structure
6 546231-546413 (+)cobalamin546503-547139 (+)Amet_0522

Amet_0522Operon

DOOR ID: 325107		Amet_0522,
Amet_0523,
Amet_0524,
Amet_0525		 View Structure
7 608582-608671 (+)c-di-GMP-I608680-608827 (+)Amet_0581

Uncharacterized protein		Amet_0581single gene

DOOR ID: 2077812		Amet_0581 View Structure
8 763663-763763 (+)SAM763938-765123 (+)Amet_0716

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Amet_0716Single gene

DOOR ID: 2077861		Amet_0716 View Structure
9 790814-790902 (+)c-di-GMP-I791155-791350 (+)Amet_0754

Uncharacterized protein		Amet_0754single gene

DOOR ID: 2077872		Amet_0754 View Structure
10 841675-841796 (+)FMN841972-842563 (+)Amet_0802

Riboflavin transporter		Amet_0802Single gene

DOOR ID: 2077897		Amet_0802 View Structure
11 944285-944386 (+)purine944537-945995 (+)Amet_0909

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		Amet_0909Operon

DOOR ID: 325187		Amet_0909,
Amet_0910 (guaA)		 View Structure
12 951516-951617 (+)purine952084-953260 (+)Amet_0916

N5-carboxyaminoimidazole ribonucleotide synthase (N5-CAIR synthase) (8) (5-(carboxyamino)imidazole ribonucleotide synthetase)		Amet_0916Single gene

DOOR ID: 2077941		Amet_0916 View Structure
13 951602-951713 (+)ykkC-yxkD952084-953260 (+)Amet_0916

N5-carboxyaminoimidazole ribonucleotide synthase (N5-CAIR synthase) (8) (5-(carboxyamino)imidazole ribonucleotide synthetase)		Amet_0916Single gene

DOOR ID: 2077941		Amet_0916 View Structure
14 968838-968949 (-)SAM967885-968683 (-)Amet_0932

ABC transporter related		Amet_0932Operon

DOOR ID: 325190		Amet_0930,
Amet_0931,
Amet_0932		 View Structure
15 974342-974431 (+)c-di-GMP-I974645-976682 (+)Amet_0940

Methyl-accepting chemotaxis sensory transducer		Amet_0940single gene

DOOR ID: 2077948		Amet_0940 View Structure
16 1065003-1065119 (+)FMN1065407-1066508 (+)Amet_1018

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Amet_1018Operon

DOOR ID: 325205		Amet_1018,
Amet_1019,
Amet_1020,
Amet_1021 (ribH)		 View Structure
17 1069180-1069304 (+)MOCO1069429-1070293 (+)Amet_1022

Extracellular solute-binding protein; family 1		Amet_1022Operon

DOOR ID: 325206		Amet_1022,
Amet_1023,
Amet_1024		 View Structure
18 1168080-1168268 (+)cobalamin1168673-1169603 (+)Amet_1117

Binding-protein-dependent transport systems inner membrane component		Amet_1117Operon

DOOR ID: 325222		Amet_1117,
Amet_1118,
Amet_1119,
Amet_1120,
Amet_1121,
Amet_1122		 View Structure
19 1296161-1296275 (-)TPP1295564-1296041 (-)Amet_1250

ThiW protein		Amet_1250Operon

DOOR ID: 325243		Amet_1247,
Amet_1248,
Amet_1249,
Amet_1250		 View Structure
20 1508597-1508682 (+)c-di-GMP-I1508757-1510746 (+)Amet_1449

Methyl-accepting chemotaxis sensory transducer		Amet_1449single gene

DOOR ID: 2078210		Amet_1449 View Structure
21 1528254-1528342 (+)c-di-GMP-I1530188-1531742 (+)Amet_1471

Integrase; catalytic region		Amet_1471operon

DOOR ID: 325279		Amet_1471,
Amet_1472,
Amet_1473		 View Structure
22 1570726-1570905 (+)cobalamin1571070-1571901 (+)Amet_1511

Cyclopropane-fatty-acyl-phospholipid synthase		Amet_1511Single gene

DOOR ID: 2078241		Amet_1511 View Structure
23 1648997-1649082 (+)c-di-GMP-I1649225-1651214 (+)Amet_1575

Methyl-accepting chemotaxis sensory transducer		Amet_1575single gene

DOOR ID: 2078274		Amet_1575 View Structure
24 2944796-2944881 (-)c-di-GMP-I2942560-2944711 (-)Amet_2926

Diguanylate cyclase/phosphodiesterase		Amet_2926single gene

DOOR ID: 2078743		Amet_2926 View Structure
25 3217608-3217724 (-)MOCO3216254-3217484 (-)Amet_3169

Molybdenum cofactor synthesis domain		Amet_3169Operon

DOOR ID: 325579		Amet_3167,
Amet_3168,
Amet_3169		 View Structure
26 3248751-3248933 (-)lysine3247425-3248421 (-)Amet_3198

Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)		Amet_3198Operon

DOOR ID: 325583		Amet_3196,
Amet_3197,
Amet_3198		 View Structure
27 3297052-3297141 (-)c-di-GMP-I3296780-3296915 (-)Amet_3243

Uncharacterized protein		Amet_3243operon

DOOR ID: 325593		Amet_3243,
Amet_3244		 View Structure
28 3301319-3301490 (-)ykoK3299686-3301054 (-)Amet_3246

Magnesium transporter MgtE		Amet_3246Single gene

DOOR ID: 2078878		Amet_3246 View Structure
29 3306785-3306870 (-)c-di-GMP-I3302929-3306658 (-)Amet_3249

Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S)		Amet_3249single gene

DOOR ID: 2078881		Amet_3249 View Structure
30 3378255-3378356 (-)purine3377500-3378109 (-)Amet_3326

Xanthine phosphoribosyltransferase (XPRTase) (2)		Amet_3326Single gene

DOOR ID: 2078907		Amet_3326 View Structure
31 3432310-3432425 (-)SAM3430869-3432147 (-)Amet_3376

O-acetylhomoserine/O-acetylserine sulfhydrylase (9)		Amet_3376Operon

DOOR ID: 325615		Amet_3372,
Amet_3373,
Amet_3374,
Amet_3375,
Amet_3376		 View Structure
32 3462235-3462325 (+)glycine3462500-3462770 (+)Amet_3398

Amet_3398Operon

DOOR ID: 325620		Amet_3398,
Amet_3399		 View Structure
33 3560645-3560727 (-)c-di-GMP-II3558894-3560580 (-)Amet_3482

Type II secretion system protein E		Amet_3482Operon

DOOR ID: 325639		Amet_3479,
Amet_3480,
Amet_3481,
Amet_3482		 View Structure
34 3691590-3691718 (-)glycine3690958-3691342 (-)Amet_3596

GrdX protein		Amet_3596Operon

DOOR ID: 325665		Amet_3595,
Amet_3596		 View Structure
35 3721186-3721369 (-)cobalamin3720501-3721065 (-)Amet_3623

Adenosylcobinamide-phosphate guanylyltransferase (2)		Amet_3623Operon

DOOR ID: 325668		Amet_3614,
Amet_3615,
Amet_3616,
Amet_3617,
Amet_3618,
Amet_3619,
Amet_3620,
Amet_3621,
Amet_3622,
Amet_3623		 View Structure
36 3807812-3807922 (-)SAM3806713-3807661 (-)Amet_3708

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Amet_3708Operon

DOOR ID: 325681		Amet_3706,
Amet_3707,
Amet_3708		 View Structure
37 3839670-3839765 (-)c-di-GMP-I3838578-3839499 (+)Amet_3740

Uncharacterized protein		Amet_3740single gene

DOOR ID: 2079081		Amet_3740 View Structure
38 4004448-4004549 (-)SAM4003259-4004324 (-)Amet_3894

Methionine import ATP-binding protein MetN 		Amet_3894Operon

DOOR ID: 325712		Amet_3891,
Amet_3892,
Amet_3893,
Amet_3894		 View Structure
39 4190124-4190244 (-)MOCO4189050-4190013 (-)Amet_4096

GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)		Amet_4096Operon

DOOR ID: 325757		Amet_4095,
Amet_4096		 View Structure
40 4346904-4347011 (-)TPP4346589-4346784 (-)Amet_4237

Thiamine biosynthesis protein ThiS		Amet_4237Operon

DOOR ID: 325785		Amet_4232,
Amet_4233,
Amet_4234,
Amet_4235,
Amet_4236,
Amet_4237		 View Structure
41 4410734-4410898 (-)glmS4408763-4410590 (-)Amet_4299

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Amet_4299Single gene

DOOR ID: 2079256		Amet_4299 View Structure
42 4463946-4464038 (+)THF4464124-4464688 (+)Amet_4324

Amet_4324Single gene

DOOR ID: 2079264		Amet_4324 View Structure
43 4518305-4518368 (-)fluoride4516996-4518184 (-)Amet_4404

Sodium/hydrogen exchanger		Amet_4404Operon

DOOR ID: 325811		Amet_4403,
Amet_4404		 View Structure
44 4554173-4554219 (-)PreQ14553378-4553936 (-)Amet_4436

Amet_4436Single gene

DOOR ID: 2079293		Amet_4436 View Structure
45 4774923-4775015 (+)TPP4775121-4775757 (+)Amet_4652

Putative proton-coupled thiamine transporter YuaJ		Amet_4652Single gene

DOOR ID: 2079364		Amet_4652 View Structure
46 4839709-4839802 (-)THF4839231-4839642 (-)Amet_4715

Amet_4715Operon

DOOR ID: 325865		Amet_4714,
Amet_4715		 View Structure
47 4848236-4848429 (-)cobalamin4846449-4848051 (-)Amet_4722

Nickel ABC transporter; periplasmic nickel-binding protein (4)		Amet_4722Operon

DOOR ID: 325866		Amet_4718,
Amet_4719,
Amet_4720,
Amet_4721,
Amet_4722		 View Structure