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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16080-16178
(+)
SAM
16237-17206 (+)
SaurJH1_0012
SaurJH1_0012
Single gene
DOOR ID:
2076534
SaurJH1_0012
View Structure
2
466128-466230
(+)
purine
466460-467039 (+)
SaurJH1_0446
Xanthine phosphoribosyltransferase (XPRTase) (2)
SaurJH1_0446
Operon
DOOR ID:
324558
SaurJH1_0446,
SaurJH1_0447,
SaurJH1_0448,
SaurJH1_0449
(guaA)
View Structure
3
803117-803163
(-)
PreQ1
802278-802947 (-)
SaurJH1_0752
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SaurJH1_0752
Operon
DOOR ID:
324625
SaurJH1_0750,
SaurJH1_0751,
SaurJH1_0752
View Structure
4
910141-910244
(+)
SAM
910332-911358 (+)
SaurJH1_0854
SaurJH1_0854
Operon
DOOR ID:
324645
SaurJH1_0854,
SaurJH1_0855,
SaurJH1_0856
View Structure
5
997443-997533
(+)
preQ1-II
998538-998916 (+)
SaurJH1_0974
SaurJH1_0974
Single gene
DOOR ID:
2076881
SaurJH1_0974
View Structure
6
1074911-1075017
(+)
yybP-ykoY
1075092-1075896 (+)
SaurJH1_1038
SaurJH1_1038
Single gene
DOOR ID:
2076903
SaurJH1_1038
View Structure
7
1180487-1180587
(-)
TPP
1179834-1180410 (-)
SaurJH1_1159
SaurJH1_1159
Operon
DOOR ID:
324698
SaurJH1_1157,
SaurJH1_1158,
SaurJH1_1159
View Structure
8
1523940-1524115
(+)
lysine
1524196-1525402 (+)
SaurJH1_1483
SaurJH1_1483
Operon
DOOR ID:
324761
SaurJH1_1483,
SaurJH1_1484,
SaurJH1_1485,
SaurJH1_1486,
SaurJH1_1487
View Structure
9
1648452-1648586
(-)
FMN
1647844-1648390 (-)
SaurJH1_1572
SaurJH1_1572
Single gene
DOOR ID:
2077095
SaurJH1_1572
View Structure
10
1701520-1701617
(-)
glycine
1700353-1701445 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SaurJH1_1628
Operon
DOOR ID:
324795
SaurJH1_1626,
SaurJH1_1627,
SaurJH1_1628
(gcvT)
View Structure
11
1838372-1838547
(-)
lysine
1836733-1838227 (-)
SaurJH1_1773
SaurJH1_1773
Single gene
DOOR ID:
2077139
SaurJH1_1773
View Structure
12
1951441-1951576
(-)
FMN
1950270-1951314 (-)
SaurJH1_1858
SaurJH1_1858
Operon
DOOR ID:
324843
SaurJH1_1855
(ribH)
,
SaurJH1_1856,
SaurJH1_1857,
SaurJH1_1858
View Structure
13
1967513-1967624
(-)
SAM
1966210-1967407 (-)
SaurJH1_1877
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SaurJH1_1877
Single gene
DOOR ID:
2077194
SaurJH1_1877
View Structure
14
2256373-2256475
(-)
TPP
2255603-2256293 (-)
SaurJH1_2169
SaurJH1_2169
Operon
DOOR ID:
324907
SaurJH1_2166
(thiE)
,
SaurJH1_2167,
SaurJH1_2168,
SaurJH1_2169
View Structure
15
2311700-2311916
(-)
glmS
2309692-2311498 (-)
SaurJH1_2225
SaurJH1_2225
Single gene
DOOR ID:
2077319
SaurJH1_2225
View Structure
16
2482741-2482836
(-)
SAM
2481350-2482730 (-)
SaurJH1_2394
SaurJH1_2394
Single gene
DOOR ID:
2077389
SaurJH1_2394
View Structure
Genome:
Staphylococcus aureus subsp. aureus JH1
(
NC_009632.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"466128-466230";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"466460-467039";i:10;s:1:"+";i:11;s:12:"SaurJH1_0446";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:12:"SaurJH1_0446";i:14;s:6:"Operon";i:15;s:6:"324558";i:16;s:57:"SaurJH1_0446;SaurJH1_0447;SaurJH1_0448;SaurJH1_0449(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"803117-803163";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"802278-802947";i:10;s:1:"-";i:11;s:12:"SaurJH1_0752";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:12:"SaurJH1_0752";i:14;s:6:"Operon";i:15;s:6:"324625";i:16;s:38:"SaurJH1_0750;SaurJH1_0751;SaurJH1_0752";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"910141-910244";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"910332-911358";i:10;s:1:"+";i:11;s:12:"SaurJH1_0854";i:12;s:0:"";i:13;s:12:"SaurJH1_0854";i:14;s:6:"Operon";i:15;s:6:"324645";i:16;s:38:"SaurJH1_0854;SaurJH1_0855;SaurJH1_0856";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"997443-997533";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"998538-998916";i:10;s:1:"+";i:11;s:12:"SaurJH1_0974";i:12;s:0:"";i:13;s:12:"SaurJH1_0974";i:14;s:11:"Single gene";i:15;s:7:"2076881";i:16;s:12:"SaurJH1_0974";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1074911-1075017";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1075092-1075896";i:10;s:1:"+";i:11;s:12:"SaurJH1_1038";i:12;s:0:"";i:13;s:12:"SaurJH1_1038";i:14;s:11:"Single gene";i:15;s:7:"2076903";i:16;s:12:"SaurJH1_1038";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1180487-1180587";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1179834-1180410";i:10;s:1:"-";i:11;s:12:"SaurJH1_1159";i:12;s:0:"";i:13;s:12:"SaurJH1_1159";i:14;s:6:"Operon";i:15;s:6:"324698";i:16;s:38:"SaurJH1_1157;SaurJH1_1158;SaurJH1_1159";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1523940-1524115";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1524196-1525402";i:10;s:1:"+";i:11;s:12:"SaurJH1_1483";i:12;s:0:"";i:13;s:12:"SaurJH1_1483";i:14;s:6:"Operon";i:15;s:6:"324761";i:16;s:64:"SaurJH1_1483;SaurJH1_1484;SaurJH1_1485;SaurJH1_1486;SaurJH1_1487";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1648452-1648586";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1647844-1648390";i:10;s:1:"-";i:11;s:12:"SaurJH1_1572";i:12;s:0:"";i:13;s:12:"SaurJH1_1572";i:14;s:11:"Single gene";i:15;s:7:"2077095";i:16;s:12:"SaurJH1_1572";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1701520-1701617";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1700353-1701445";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"SaurJH1_1628";i:14;s:6:"Operon";i:15;s:6:"324795";i:16;s:44:"SaurJH1_1626;SaurJH1_1627;SaurJH1_1628(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1838372-1838547";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1836733-1838227";i:10;s:1:"-";i:11;s:12:"SaurJH1_1773";i:12;s:0:"";i:13;s:12:"SaurJH1_1773";i:14;s:11:"Single gene";i:15;s:7:"2077139";i:16;s:12:"SaurJH1_1773";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1951441-1951576";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1950270-1951314";i:10;s:1:"-";i:11;s:12:"SaurJH1_1858";i:12;s:0:"";i:13;s:12:"SaurJH1_1858";i:14;s:6:"Operon";i:15;s:6:"324843";i:16;s:57:"SaurJH1_1855(ribH);SaurJH1_1856;SaurJH1_1857;SaurJH1_1858";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1967513-1967624";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1966210-1967407";i:10;s:1:"-";i:11;s:12:"SaurJH1_1877";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:12:"SaurJH1_1877";i:14;s:11:"Single gene";i:15;s:7:"2077194";i:16;s:12:"SaurJH1_1877";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2256373-2256475";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2255603-2256293";i:10;s:1:"-";i:11;s:12:"SaurJH1_2169";i:12;s:0:"";i:13;s:12:"SaurJH1_2169";i:14;s:6:"Operon";i:15;s:6:"324907";i:16;s:57:"SaurJH1_2166(thiE);SaurJH1_2167;SaurJH1_2168;SaurJH1_2169";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2311700-2311916";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2309692-2311498";i:10;s:1:"-";i:11;s:12:"SaurJH1_2225";i:12;s:0:"";i:13;s:12:"SaurJH1_2225";i:14;s:11:"Single gene";i:15;s:7:"2077319";i:16;s:12:"SaurJH1_2225";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009632.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH1 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2482741-2482836";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2481350-2482730";i:10;s:1:"-";i:11;s:12:"SaurJH1_2394";i:12;s:0:"";i:13;s:12:"SaurJH1_2394";i:14;s:11:"Single gene";i:15;s:7:"2077389";i:16;s:12:"SaurJH1_2394";i:17;s:0:"";i:18;s:15:"View Structure ";}}