Genome: Clostridium beijerinckii NCIMB 8052 (NC_009617.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 85446-85546 (-)TPP84712-85390 (-)Cbei_0066

Putative proton-coupled thiamine transporter YuaJ		Cbei_0066Single gene

DOOR ID: 2072815		Cbei_0066 View Structure
2 272667-272784 (+)SAM272921-274070 (+)Cbei_0239

Cystathionine gamma-synthase (8)		Cbei_0239Operon

DOOR ID: 323143		Cbei_0239,
Cbei_0240		 View Structure
3 282070-282393 (+)glmS282510-284337 (+)Cbei_0246

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Cbei_0246Single gene

DOOR ID: 2072869		Cbei_0246 View Structure
4 398929-399026 (+)purine399173-400631 (+)Cbei_0331

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		Cbei_0331Single gene

DOOR ID: 2072920		Cbei_0331 View Structure
5 516269-516366 (+)SAM516602-517778 (+)Cbei_0428

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Cbei_0428Single gene

DOOR ID: 2072968		Cbei_0428 View Structure
6 562620-562737 (+)FMN562926-563508 (+)Cbei_0464

Riboflavin transporter		Cbei_0464Single gene

DOOR ID: 2072995		Cbei_0464 View Structure
7 646595-646680 (+)c-di-GMP-I646715-647081 (+)Cbei_0537

Response regulator receiver protein		Cbei_0537single gene

DOOR ID: 2073031		Cbei_0537 View Structure
8 760881-760999 (+)SAM761142-762108 (+)Cbei_0636

Methionine import ATP-binding protein MetN 		Cbei_0636Operon

DOOR ID: 323212		Cbei_0636,
Cbei_0637,
Cbei_0638		 View Structure
9 773755-773862 (+)TPP774049-774853 (+)Cbei_0647

Thiamine biosynthesis protein ThiF		Cbei_0647Operon

DOOR ID: 323214		Cbei_0647,
Cbei_0648		 View Structure
10 930691-930804 (+)SAM931003-932293 (+)Cbei_0766

O-acetylhomoserine/O-acetylserine sulfhydrylase (9)		Cbei_0766Single gene

DOOR ID: 2073163		Cbei_0766 View Structure
11 958966-959140 (-)lysine957389-958814 (-)Cbei_0788

Amino acid permease-associated region		Cbei_0788Single gene

DOOR ID: 2073175		Cbei_0788 View Structure
12 1066054-1066144 (+)c-di-GMP-I1066487-1067222 (+)Cbei_0874

Transferase hexapeptide repeat containing protein		Cbei_0874operon

DOOR ID: 323254		Cbei_0874,
Cbei_0875		 View Structure
13 1211931-1212029 (+)ZMP-ZTP1212098-1214330 (+)Cbei_1011

Formate acetyltransferase (4)		Cbei_1011Single gene

DOOR ID: 2073269		Cbei_1011 View Structure
14 1272636-1272718 (+)c-di-GMP-II1272786-1273089 (+)Cbei_1061

Cbei_1061Single gene

DOOR ID: 2073299		Cbei_1061 View Structure
15 1448428-1448543 (+)FMN1448875-1449961 (+)Cbei_1224

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Cbei_1224Operon

DOOR ID: 323320		Cbei_1224,
Cbei_1225,
Cbei_1226		 View Structure
16 1647224-1647332 (+)SAM1647490-1648174 (+)Cbei_1401

Vitamin B12 dependent methionine synthase; activation region		Cbei_1401Operon

DOOR ID: 323354		Cbei_1401,
Cbei_1402		 View Structure
17 1709985-1710119 (-)ydaO-yuaA1708916-1709783 (-)Cbei_1453

YodP		Cbei_1453Single gene

DOOR ID: 2073467		Cbei_1453 View Structure
18 2204674-2204778 (+)purine2204804-2206199 (+)Cbei_1910

FAD dependent oxidoreductase		Cbei_1910Single gene

DOOR ID: 2073689		Cbei_1910 View Structure
19 2207052-2207135 (+)c-di-GMP-II2207253-2207457 (+)Cbei_1911

Cbei_1911Single gene

DOOR ID: 2073690		Cbei_1911 View Structure
20 2434090-2434188 (+)TPP2434279-2434948 (+)Cbei_2088

Aminopyrimidine aminohydrolase 		Cbei_2088Operon

DOOR ID: 323471		Cbei_2088,
Cbei_2089,
Cbei_2090,
Cbei_2091		 View Structure
21 2550212-2550295 (+)c-di-GMP-II2550514-2551726 (+)Cbei_2184

Diguanylate phosphodiesterase		Cbei_2184Single gene

DOOR ID: 2073829		Cbei_2184 View Structure
22 2581547-2581690 (+)yybP-ykoY2581759-2582614 (+)Cbei_2213

Protease HtpX homolog 		Cbei_2213Single gene

DOOR ID: 2073846		Cbei_2213 View Structure
23 2674379-2674632 (+)cobalamin2674828-2675653 (+)Cbei_2309

Anaerobic cobalt chelatase		Cbei_2309Operon

DOOR ID: 323498		Cbei_2309,
Cbei_2310,
Cbei_2311 (cbiC),
Cbei_2312 (cbiD)		 View Structure
24 2808883-2808984 (+)purine2809128-2810481 (+)Cbei_2426

Uracil-xanthine permease		Cbei_2426Operon

DOOR ID: 323517		Cbei_2426,
Cbei_2427		 View Structure
25 2936858-2936944 (-)glycine2936105-2936708 (-)Cbei_2529

Cbei_2529Single gene

DOOR ID: 2074063		Cbei_2529 View Structure
26 3440152-3440282 (+)ydaO-yuaA3440401-3441262 (+)Cbei_2934

4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) 		Cbei_2934Single gene

DOOR ID: 2074274		Cbei_2934 View Structure
27 3552527-3552610 (-)c-di-GMP-II3550679-3552401 (-)Cbei_3045

Methyl-accepting chemotaxis sensory transducer		Cbei_3045Single gene

DOOR ID: 2074329		Cbei_3045 View Structure
28 3573231-3573322 (-)yybP-ykoY3572044-3572776 (-)Cbei_3062

Cbei_3062Single gene

DOOR ID: 2074339		Cbei_3062 View Structure
29 3802929-3803027 (-)ykkC-yxkD3802436-3802826 (-)Cbei_3265

Amino acid-binding ACT domain protein		Cbei_3265Single gene

DOOR ID: 2074480		Cbei_3265 View Structure
30 3911114-3911285 (+)ykoK3911520-3912777 (+)Cbei_3363

MgtE intracellular region		Cbei_3363Operon

DOOR ID: 323658		Cbei_3363,
Cbei_3364		 View Structure
31 3993812-3993909 (-)ykkC-yxkD3993149-3993755 (-)Cbei_3447

Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta		Cbei_3447Operon

DOOR ID: 323672		Cbei_3446,
Cbei_3447		 View Structure
32 4111685-4111764 (-)ZMP-ZTP4110465-4111638 (-)Cbei_3561

Phosphoribosylaminoimidazolecarboxamide formyltransferase 		Cbei_3561Single gene

DOOR ID: 2074651		Cbei_3561 View Structure
33 4224983-4225037 (-)glutamine4221631-4222546 (-)Cbei_3670

RNA-directed DNA polymerase (Reverse transcriptase)		Cbei_3670Single gene

DOOR ID: 2074715		Cbei_3670 View Structure
34 4257962-4258129 (+)cobalamin4258476-4259391 (+)Cbei_3702

Periplasmic binding protein		Cbei_3702Operon

DOOR ID: 323720		Cbei_3702,
Cbei_3703,
Cbei_3704		 View Structure
35 4270812-4270988 (-)cobalamin4269389-4270220 (-)Cbei_3712

Cobalt ABC transporter; inner membrane subunit CbiQ		Cbei_3712Single gene

DOOR ID: 2074733		Cbei_3712 View Structure
36 4369677-4369760 (-)c-di-GMP-II4367901-4369593 (-)Cbei_3804

Methyl-accepting chemotaxis sensory transducer		Cbei_3804Single gene

DOOR ID: 2074777		Cbei_3804 View Structure
37 4560120-4560207 (-)glycine4558585-4559980 (-)Cbei_3972

Amino acid permease-associated region		Cbei_3972Single gene

DOOR ID: 2074868		Cbei_3972 View Structure
38 4634259-4634346 (-)c-di-GMP-I4633785-4634118 (-)Cbei_4033

Uncharacterized protein		Cbei_4033operon

DOOR ID: 323774		Cbei_4032,
Cbei_4033		 View Structure
39 4671524-4671625 (-)purine4670008-4671301 (-)Cbei_4067

Xanthine/uracil/vitamin C permease		Cbei_4067Single gene

DOOR ID: 2074914		Cbei_4067 View Structure
40 4868568-4868651 (-)c-di-GMP-II4867580-4868333 (-)Cbei_4219

Peptidase A24A domain protein		Cbei_4219Single gene

DOOR ID: 2074994		Cbei_4219 View Structure
41 4931096-4931184 (-)c-di-GMP-I4930136-4930925 (-)Cbei_4273

MotA/TolQ/ExbB proton channel		Cbei_4273operon

DOOR ID: 323816		Cbei_4272,
Cbei_4273		 View Structure
42 5197388-5197498 (-)TPP5196658-5197198 (-)Cbei_4491

ThiW protein		Cbei_4491Operon

DOOR ID: 323860		Cbei_4489,
Cbei_4490,
Cbei_4491		 View Structure
43 5599247-5599417 (-)lysine5597635-5598931 (-)Cbei_4787

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		Cbei_4787Single gene

DOOR ID: 2075269		Cbei_4787 View Structure
44 5927041-5927207 (-)lysine5926025-5926895 (-)Cbei_5037

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		Cbei_5037Single gene

DOOR ID: 2075399		Cbei_5037 View Structure