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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1176516-1176715
(+)
cobalamin
1176777-1177941 (+)
BDI_1017
Putative exported periplasmic protein
BDI_1017
Operon
DOOR ID:
322121
BDI_1017,
BDI_1018,
BDI_1019
View Structure
2
1232383-1232480
(-)
TPP
1230950-1231547 (-)
BDI_1061
Thiamine phosphate pyrophosphorylase
BDI_1061
Operon
DOOR ID:
322130
BDI_1059,
BDI_1060,
BDI_1061,
BDI_1062
View Structure
3
1245336-1245533
(-)
cobalamin
1244290-1245211 (-)
BDI_1070
Anaerobic cobalt chelatase CbiK
BDI_1070
Single gene
DOOR ID:
2071614
BDI_1070
View Structure
4
1887765-1887861
(-)
TPP
1886931-1887702 (-)
BDI_1609
Thiamine thiazole synthase
BDI_1609
Single gene
DOOR ID:
2071808
BDI_1609
View Structure
5
2695426-2695629
(-)
cobalamin
2694525-2695140 (-)
BDI_2299
BDI_2299
Single gene
DOOR ID:
2072035
BDI_2299
View Structure
6
4143709-4143906
(-)
cobalamin
4142321-4143659 (-)
BDI_3405
BDI_3405
Single gene
DOOR ID:
2072383
BDI_3405
View Structure
7
4147177-4147378
(+)
cobalamin
4147426-4149610 (+)
BDI_3408
Putative iron transport-related exported protein
BDI_3408
Operon
DOOR ID:
322643
BDI_3408,
BDI_3409
View Structure
8
4153942-4154139
(-)
cobalamin
4151766-4153830 (-)
BDI_3411
TonB-dependent receptor
BDI_3411
Operon
DOOR ID:
322644
BDI_3410,
BDI_3411
View Structure
9
4157650-4157855
(+)
cobalamin
4157892-4159896 (+)
BDI_3417
Putative vitamin B12 receptor
BDI_3417
Operon
DOOR ID:
322646
BDI_3417,
BDI_3418,
BDI_3419,
BDI_3420
View Structure
10
4322198-4322308
(-)
TPP
4319956-4322155 (-)
BDI_3531
Putative TonB-dependent transmembrane receptor protein
BDI_3531
Operon
DOOR ID:
322671
BDI_3529,
BDI_3530,
BDI_3531
View Structure
Genome:
Parabacteroides distasonis ATCC 8503
(
NC_009615.1
);
Phylum:
Bacteroidetes/Chlorobi group
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thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2695426-2695629";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2694525-2695140";i:10;s:1:"-";i:11;s:8:"BDI_2299";i:12;s:0:"";i:13;s:8:"BDI_2299";i:14;s:11:"Single gene";i:15;s:7:"2072035";i:16;s:8:"BDI_2299";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4143709-4143906";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4142321-4143659";i:10;s:1:"-";i:11;s:8:"BDI_3405";i:12;s:0:"";i:13;s:8:"BDI_3405";i:14;s:11:"Single gene";i:15;s:7:"2072383";i:16;s:8:"BDI_3405";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4147177-4147378";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4147426-4149610";i:10;s:1:"+";i:11;s:8:"BDI_3408";i:12;s:48:"Putative iron transport-related exported protein";i:13;s:8:"BDI_3408";i:14;s:6:"Operon";i:15;s:6:"322643";i:16;s:17:"BDI_3408;BDI_3409";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4153942-4154139";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4151766-4153830";i:10;s:1:"-";i:11;s:8:"BDI_3411";i:12;s:23:"TonB-dependent receptor";i:13;s:8:"BDI_3411";i:14;s:6:"Operon";i:15;s:6:"322644";i:16;s:17:"BDI_3410;BDI_3411";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4157650-4157855";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4157892-4159896";i:10;s:1:"+";i:11;s:8:"BDI_3417";i:12;s:29:"Putative vitamin B12 receptor";i:13;s:8:"BDI_3417";i:14;s:6:"Operon";i:15;s:6:"322646";i:16;s:35:"BDI_3417;BDI_3418;BDI_3419;BDI_3420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009615.1";i:2;s:37:"Parabacteroides distasonis ATCC 8503 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4322198-4322308";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4319956-4322155";i:10;s:1:"-";i:11;s:8:"BDI_3531";i:12;s:54:"Putative TonB-dependent transmembrane receptor protein";i:13;s:8:"BDI_3531";i:14;s:6:"Operon";i:15;s:6:"322671";i:16;s:26:"BDI_3529;BDI_3530;BDI_3531";i:17;s:0:"";i:18;s:15:"View Structure ";}}