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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2138743-2138926
(-)
cobalamin
2136436-2138713 (-)
BVU_1654
Anaerobic ribonucleoside-triphosphate reductase
BVU_1654
Single gene
DOOR ID:
2070429
BVU_1654
View Structure
2
2668068-2668295
(-)
cobalamin
2665981-2668003 (-)
BVU_2057
Outer membrane vitamin B12 receptor protein
BVU_2057
Operon
DOOR ID:
321444
BVU_2055,
BVU_2056,
BVU_2057
View Structure
3
3181471-3181528
(+)
PreQ1
3182144-3182588 (-)
BVU_2479
BVU_2479
Single gene
DOOR ID:
2070718
BVU_2479
View Structure
4
3911275-3911478
(-)
cobalamin
3909043-3911221 (-)
BVU_3092
Putative TonB-dependent outer membrane protein
BVU_3092
Operon
DOOR ID:
321666
BVU_3091,
BVU_3092
View Structure
5
3919587-3919800
(-)
cobalamin
3917005-3919525 (-)
BVU_3098
Ribonucleoside-diphosphate reductase
BVU_3098
Single gene
DOOR ID:
2070924
BVU_3098
View Structure
6
3926422-3926628
(-)
cobalamin
3924629-3926141 (-)
BVU_3104
Pyruvate carboxylase subunit A
BVU_3104
Operon
DOOR ID:
321668
BVU_3102,
BVU_3103,
BVU_3104
View Structure
7
3926721-3926940
(+)
cobalamin
3927069-3929163 (+)
BVU_3105
Oxygen-sensitive ribonucleoside-triphosphate reductase
BVU_3105
Operon
DOOR ID:
321669
BVU_3105,
BVU_3106
View Structure
8
3933086-3933285
(-)
cobalamin
3930893-3932954 (-)
BVU_3108
TonB-dependent receptor
BVU_3108
Single gene
DOOR ID:
2070926
BVU_3108
View Structure
9
3935557-3935763
(-)
cobalamin
3933326-3935504 (-)
BVU_3110
Putative iron transport-related exported protein
BVU_3110
Single gene
DOOR ID:
2070928
BVU_3110
View Structure
10
4394716-4394819
(+)
TPP
4394880-4395081 (+)
BVU_3540
Putative ThiS protein; involved in thiamine biosynthesis
BVU_3540
Operon
DOOR ID:
321765
BVU_3540,
BVU_3541
(thiE)
,
BVU_3542
(thiG)
,
BVU_3543,
BVU_3544,
BVU_3545
View Structure
11
5040129-5040332
(+)
cobalamin
5040507-5041134 (-)
BVU_4098
BVU_4098
Operon
DOOR ID:
321883
BVU_4098,
BVU_4099,
BVU_4100,
BVU_4101
View Structure
Genome:
Bacteroides vulgatus ATCC 8482
(
NC_009614.1
);
Phylum:
Bacteroidetes/Chlorobi group
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involved in thiamine biosynthesis";i:13;s:8:"BVU_3540";i:14;s:6:"Operon";i:15;s:6:"321765";i:16;s:65:"BVU_3540;BVU_3541(thiE);BVU_3542(thiG);BVU_3543;BVU_3544;BVU_3545";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009614.1";i:2;s:31:"Bacteroides vulgatus ATCC 8482 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"5040129-5040332";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5040507-5041134";i:10;s:1:"-";i:11;s:8:"BVU_4098";i:12;s:0:"";i:13;s:8:"BVU_4098";i:14;s:6:"Operon";i:15;s:6:"321883";i:16;s:35:"BVU_4098;BVU_4099;BVU_4100;BVU_4101";i:17;s:0:"";i:18;s:15:"View Structure ";}}
