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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2979106-2979195
(+)
glycine
2979361-2980495 (+)
gcvT
Glycine cleavage system T protein
Swit_2694
Operon
DOOR ID:
314395
Swit_2694
(gcvT)
,
Swit_2695
View Structure
2
2979196-2979311
(+)
glycine
2979361-2980495 (+)
gcvT
Glycine cleavage system T protein
Swit_2694
Operon
DOOR ID:
314395
Swit_2694
(gcvT)
,
Swit_2695
View Structure
3
3070395-3070564
(-)
yybP-ykoY
3069813-3070380 (-)
Swit_2778
Swit_2778
Operon
DOOR ID:
314412
Swit_2774,
Swit_2775,
Swit_2776
(hisD)
,
Swit_2777
(hisG)
,
Swit_2778
View Structure
4
3089206-3089282
(-)
fluoride
3088802-3089180 (-)
Swit_2801
Putative fluoride ion transporter CrcB
Swit_2801
Single gene
DOOR ID:
2057373
Swit_2801
View Structure
5
3500554-3500758
(-)
cobalamin
3498553-3500425 (-)
Swit_3189
TonB-dependent receptor; plug
Swit_3189
Single gene
DOOR ID:
2057515
Swit_3189
View Structure
6
3517936-3518041
(+)
TPP
3518083-3519943 (+)
Swit_3201
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Swit_3201
Single gene
DOOR ID:
2057520
Swit_3201
View Structure
7
5269503-5269738
(-)
cobalamin
5266906-5269228 (-)
Swit_4786
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Swit_4786
Operon
DOOR ID:
314842
Swit_4785,
Swit_4786
View Structure
Genome:
Sphingomonas wittichii RW1
(
NC_009511.1
);
Phylum:
Alphaproteobacteria
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