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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
16011-16109
(+)
SAM
16168-17137 (+)
SaurJH9_0012
SaurJH9_0012
Single gene
DOOR ID:
2049969
SaurJH9_0012
View Structure
2
466058-466160
(+)
purine
466390-466969 (+)
SaurJH9_0435
Xanthine phosphoribosyltransferase (XPRTase) (2)
SaurJH9_0435
Operon
DOOR ID:
311055
SaurJH9_0435,
SaurJH9_0436,
SaurJH9_0437,
SaurJH9_0438
(guaA)
View Structure
3
803242-803288
(-)
PreQ1
802403-803072 (-)
SaurJH9_0736
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SaurJH9_0736
Operon
DOOR ID:
311122
SaurJH9_0734,
SaurJH9_0735,
SaurJH9_0736
View Structure
4
910266-910369
(+)
SAM
910457-911483 (+)
SaurJH9_0838
SaurJH9_0838
Operon
DOOR ID:
311142
SaurJH9_0838,
SaurJH9_0839,
SaurJH9_0840
View Structure
5
997568-997658
(+)
preQ1-II
998663-999041 (+)
SaurJH9_0955
SaurJH9_0955
Single gene
DOOR ID:
2050307
SaurJH9_0955
View Structure
6
1075037-1075143
(+)
yybP-ykoY
1075218-1076022 (+)
SaurJH9_1019
SaurJH9_1019
Single gene
DOOR ID:
2050329
SaurJH9_1019
View Structure
7
1180613-1180713
(-)
TPP
1179960-1180536 (-)
SaurJH9_1137
SaurJH9_1137
Operon
DOOR ID:
311196
SaurJH9_1135,
SaurJH9_1136,
SaurJH9_1137
View Structure
8
1524067-1524242
(+)
lysine
1524323-1525529 (+)
SaurJH9_1454
SaurJH9_1454
Operon
DOOR ID:
311256
SaurJH9_1454,
SaurJH9_1455,
SaurJH9_1456,
SaurJH9_1457,
SaurJH9_1458
View Structure
9
1648578-1648712
(-)
FMN
1647970-1648516 (-)
SaurJH9_1541
SaurJH9_1541
Single gene
DOOR ID:
2050519
SaurJH9_1541
View Structure
10
1701646-1701743
(-)
glycine
1700479-1701571 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SaurJH9_1595
Operon
DOOR ID:
311290
SaurJH9_1593,
SaurJH9_1594,
SaurJH9_1595
(gcvT)
View Structure
11
1838498-1838673
(-)
lysine
1836859-1838353 (-)
SaurJH9_1739
SaurJH9_1739
Single gene
DOOR ID:
2050565
SaurJH9_1739
View Structure
12
1951567-1951702
(-)
FMN
1950396-1951440 (-)
SaurJH9_1823
SaurJH9_1823
Operon
DOOR ID:
311337
SaurJH9_1820
(ribH)
,
SaurJH9_1821,
SaurJH9_1822,
SaurJH9_1823
View Structure
13
1967639-1967750
(-)
SAM
1966336-1967533 (-)
SaurJH9_1841
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SaurJH9_1841
Single gene
DOOR ID:
2050618
SaurJH9_1841
View Structure
14
2256498-2256600
(-)
TPP
2255728-2256418 (-)
SaurJH9_2131
SaurJH9_2131
Operon
DOOR ID:
311402
SaurJH9_2128
(thiE)
,
SaurJH9_2129,
SaurJH9_2130,
SaurJH9_2131
View Structure
15
2311825-2312041
(-)
glmS
2309817-2311623 (-)
SaurJH9_2187
SaurJH9_2187
Single gene
DOOR ID:
2050750
SaurJH9_2187
View Structure
16
2482865-2482960
(-)
SAM
2481474-2482854 (-)
SaurJH9_2351
SaurJH9_2351
Single gene
DOOR ID:
2050817
SaurJH9_2351
View Structure
Genome:
Staphylococcus aureus subsp. aureus JH9
(
NC_009487.1
);
Phylum:
Firmicutes
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";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"466058-466160";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"466390-466969";i:10;s:1:"+";i:11;s:12:"SaurJH9_0435";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:12:"SaurJH9_0435";i:14;s:6:"Operon";i:15;s:6:"311055";i:16;s:57:"SaurJH9_0435;SaurJH9_0436;SaurJH9_0437;SaurJH9_0438(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"803242-803288";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"802403-803072";i:10;s:1:"-";i:11;s:12:"SaurJH9_0736";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:12:"SaurJH9_0736";i:14;s:6:"Operon";i:15;s:6:"311122";i:16;s:38:"SaurJH9_0734;SaurJH9_0735;SaurJH9_0736";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"910266-910369";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"910457-911483";i:10;s:1:"+";i:11;s:12:"SaurJH9_0838";i:12;s:0:"";i:13;s:12:"SaurJH9_0838";i:14;s:6:"Operon";i:15;s:6:"311142";i:16;s:38:"SaurJH9_0838;SaurJH9_0839;SaurJH9_0840";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"997568-997658";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"998663-999041";i:10;s:1:"+";i:11;s:12:"SaurJH9_0955";i:12;s:0:"";i:13;s:12:"SaurJH9_0955";i:14;s:11:"Single gene";i:15;s:7:"2050307";i:16;s:12:"SaurJH9_0955";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1075037-1075143";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1075218-1076022";i:10;s:1:"+";i:11;s:12:"SaurJH9_1019";i:12;s:0:"";i:13;s:12:"SaurJH9_1019";i:14;s:11:"Single gene";i:15;s:7:"2050329";i:16;s:12:"SaurJH9_1019";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1180613-1180713";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1179960-1180536";i:10;s:1:"-";i:11;s:12:"SaurJH9_1137";i:12;s:0:"";i:13;s:12:"SaurJH9_1137";i:14;s:6:"Operon";i:15;s:6:"311196";i:16;s:38:"SaurJH9_1135;SaurJH9_1136;SaurJH9_1137";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1524067-1524242";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1524323-1525529";i:10;s:1:"+";i:11;s:12:"SaurJH9_1454";i:12;s:0:"";i:13;s:12:"SaurJH9_1454";i:14;s:6:"Operon";i:15;s:6:"311256";i:16;s:64:"SaurJH9_1454;SaurJH9_1455;SaurJH9_1456;SaurJH9_1457;SaurJH9_1458";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1648578-1648712";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1647970-1648516";i:10;s:1:"-";i:11;s:12:"SaurJH9_1541";i:12;s:0:"";i:13;s:12:"SaurJH9_1541";i:14;s:11:"Single gene";i:15;s:7:"2050519";i:16;s:12:"SaurJH9_1541";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1701646-1701743";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1700479-1701571";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"SaurJH9_1595";i:14;s:6:"Operon";i:15;s:6:"311290";i:16;s:44:"SaurJH9_1593;SaurJH9_1594;SaurJH9_1595(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1838498-1838673";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1836859-1838353";i:10;s:1:"-";i:11;s:12:"SaurJH9_1739";i:12;s:0:"";i:13;s:12:"SaurJH9_1739";i:14;s:11:"Single gene";i:15;s:7:"2050565";i:16;s:12:"SaurJH9_1739";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1951567-1951702";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1950396-1951440";i:10;s:1:"-";i:11;s:12:"SaurJH9_1823";i:12;s:0:"";i:13;s:12:"SaurJH9_1823";i:14;s:6:"Operon";i:15;s:6:"311337";i:16;s:57:"SaurJH9_1820(ribH);SaurJH9_1821;SaurJH9_1822;SaurJH9_1823";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1967639-1967750";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1966336-1967533";i:10;s:1:"-";i:11;s:12:"SaurJH9_1841";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:12:"SaurJH9_1841";i:14;s:11:"Single gene";i:15;s:7:"2050618";i:16;s:12:"SaurJH9_1841";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2256498-2256600";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2255728-2256418";i:10;s:1:"-";i:11;s:12:"SaurJH9_2131";i:12;s:0:"";i:13;s:12:"SaurJH9_2131";i:14;s:6:"Operon";i:15;s:6:"311402";i:16;s:57:"SaurJH9_2128(thiE);SaurJH9_2129;SaurJH9_2130;SaurJH9_2131";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2311825-2312041";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2309817-2311623";i:10;s:1:"-";i:11;s:12:"SaurJH9_2187";i:12;s:0:"";i:13;s:12:"SaurJH9_2187";i:14;s:11:"Single gene";i:15;s:7:"2050750";i:16;s:12:"SaurJH9_2187";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009487.1";i:2;s:40:"Staphylococcus aureus subsp. aureus JH9 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2482865-2482960";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2481474-2482854";i:10;s:1:"-";i:11;s:12:"SaurJH9_2351";i:12;s:0:"";i:13;s:12:"SaurJH9_2351";i:14;s:11:"Single gene";i:15;s:7:"2050817";i:16;s:12:"SaurJH9_2351";i:17;s:0:"";i:18;s:15:"View Structure ";}}