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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
329290-329370
(-)
ZMP-ZTP
327672-329265 (-)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
BBta_0323
Single gene
DOOR ID:
2046451
BBta_0323
(purH)
View Structure
2
758361-758463
(+)
ykkC-yxkD
758538-759609 (+)
BBta_0739
Putative ABC transporter; substrate-binding protein
BBta_0739
Single gene
DOOR ID:
2046646
BBta_0739
View Structure
3
790361-790440
(-)
sam-alpha
789075-790284 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BBta_0768
Single gene
DOOR ID:
2046662
BBta_0768
(metZ)
View Structure
4
1259834-1259913
(+)
sam-alpha
1259995-1261219 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
BBta_1186
Operon
DOOR ID:
309468
BBta_1186
(metX)
,
BBta_1187
View Structure
5
1817692-1817887
(+)
FMN
1817963-1818575 (+)
BBta_1745
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
BBta_1745
Single gene
DOOR ID:
2047143
BBta_1745
View Structure
6
2345436-2345586
(-)
SAH
2343343-2344744 (-)
eutB
Ethanolamine ammonia-lyase heavy chain
BBta_2264
Operon
DOOR ID:
309644
BBta_2262,
BBta_2263
(eutC)
,
BBta_2264
(eutB)
View Structure
7
3290341-3290534
(+)
cobalamin
3290651-3291284 (+)
BBta_3141
BBta_3141
Single gene
DOOR ID:
2047683
BBta_3141
View Structure
8
4669441-4669536
(-)
SAH
4668170-4669412 (-)
BBta_4458
L-threonine synthase
BBta_4458
Operon
DOOR ID:
310042
BBta_4457,
BBta_4458
View Structure
9
6303139-6303357
(+)
cobalamin
6303466-6305509 (+)
BBta_6079
Putative TonB-dependent receptor
BBta_6079
Single gene
DOOR ID:
2048926
BBta_6079
View Structure
10
6305642-6305856
(+)
cobalamin
6305968-6308041 (+)
BBta_6080
Putative TonB-dependent receptor
BBta_6080
Operon
DOOR ID:
310321
BBta_6080,
BBta_6081
View Structure
11
6469821-6469931
(+)
TPP
6470925-6471123 (+)
thiS
Sulfur carrier protein ThiS
BBta_6223
Operon
DOOR ID:
310348
BBta_6222
(thiO)
,
BBta_6223
(thiS)
View Structure
12
7441602-7441708
(+)
SAH
7442178-7443498 (-)
BBta_7096
TrapT family; dctM subunit; C4-dicarboxylate transport
BBta_7096
Operon
DOOR ID:
310502
BBta_7095,
BBta_7096,
BBta_7097
View Structure
13
7765934-7766085
(-)
yybP-ykoY
7765351-7765909 (-)
BBta_7389
Putative manganese efflux pump MntP
BBta_7389
Single gene
DOOR ID:
2049518
BBta_7389
View Structure
14
8062219-8062291
(-)
SAH
8060391-8061741 (+)
regS
Histidine kinase
BBta_7659
Operon
DOOR ID:
310591
BBta_7659
(regS)
,
BBta_7660
(regR)
View Structure
Genome:
Bradyrhizobium sp. BTAi1
(
NC_009485.1
);
Phylum:
Alphaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"329290-329370";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"327672-329265";i:10;s:1:"-";i:11;s:4:"purH";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"BBta_0323";i:14;s:11:"Single gene";i:15;s:7:"2046451";i:16;s:15:"BBta_0323(purH)";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"758361-758463";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"758538-759609";i:10;s:1:"+";i:11;s:9:"BBta_0739";i:12;s:51:"Putative ABC transporter; substrate-binding protein";i:13;s:9:"BBta_0739";i:14;s:11:"Single gene";i:15;s:7:"2046646";i:16;s:9:"BBta_0739";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"790361-790440";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"789075-790284";i:10;s:1:"-";i:11;s:4:"metZ";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"BBta_0768";i:14;s:11:"Single gene";i:15;s:7:"2046662";i:16;s:15:"BBta_0768(metZ)";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1259834-1259913";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"1259995-1261219";i:10;s:1:"+";i:11;s:4:"metX";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"BBta_1186";i:14;s:6:"Operon";i:15;s:6:"309468";i:16;s:25:"BBta_1186(metX);BBta_1187";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1817692-1817887";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1817963-1818575";i:10;s:1:"+";i:11;s:9:"BBta_1745";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:9:"BBta_1745";i:14;s:11:"Single gene";i:15;s:7:"2047143";i:16;s:9:"BBta_1745";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2345436-2345586";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2343343-2344744";i:10;s:1:"-";i:11;s:4:"eutB";i:12;s:39:"Ethanolamine ammonia-lyase heavy chain ";i:13;s:9:"BBta_2264";i:14;s:6:"Operon";i:15;s:6:"309644";i:16;s:41:"BBta_2262;BBta_2263(eutC);BBta_2264(eutB)";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3290341-3290534";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3290651-3291284";i:10;s:1:"+";i:11;s:9:"BBta_3141";i:12;s:0:"";i:13;s:9:"BBta_3141";i:14;s:11:"Single gene";i:15;s:7:"2047683";i:16;s:9:"BBta_3141";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4669441-4669536";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4668170-4669412";i:10;s:1:"-";i:11;s:9:"BBta_4458";i:12;s:21:"L-threonine synthase ";i:13;s:9:"BBta_4458";i:14;s:6:"Operon";i:15;s:6:"310042";i:16;s:19:"BBta_4457;BBta_4458";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6303139-6303357";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6303466-6305509";i:10;s:1:"+";i:11;s:9:"BBta_6079";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:9:"BBta_6079";i:14;s:11:"Single gene";i:15;s:7:"2048926";i:16;s:9:"BBta_6079";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6305642-6305856";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"6305968-6308041";i:10;s:1:"+";i:11;s:9:"BBta_6080";i:12;s:32:"Putative TonB-dependent receptor";i:13;s:9:"BBta_6080";i:14;s:6:"Operon";i:15;s:6:"310321";i:16;s:19:"BBta_6080;BBta_6081";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"6469821-6469931";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"6470925-6471123";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:27:"Sulfur carrier protein ThiS";i:13;s:9:"BBta_6223";i:14;s:6:"Operon";i:15;s:6:"310348";i:16;s:31:"BBta_6222(thiO);BBta_6223(thiS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7441602-7441708";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"7442178-7443498";i:10;s:1:"-";i:11;s:9:"BBta_7096";i:12;s:54:"TrapT family; dctM subunit; C4-dicarboxylate transport";i:13;s:9:"BBta_7096";i:14;s:6:"Operon";i:15;s:6:"310502";i:16;s:29:"BBta_7095;BBta_7096;BBta_7097";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"7765934-7766085";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"7765351-7765909";i:10;s:1:"-";i:11;s:9:"BBta_7389";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"BBta_7389";i:14;s:11:"Single gene";i:15;s:7:"2049518";i:16;s:9:"BBta_7389";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009485.1";i:2;s:25:"Bradyrhizobium sp. BTAi1 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"8062219-8062291";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"8060391-8061741";i:10;s:1:"+";i:11;s:4:"regS";i:12;s:17:"Histidine kinase ";i:13;s:9:"BBta_7659";i:14;s:6:"Operon";i:15;s:6:"310591";i:16;s:31:"BBta_7659(regS);BBta_7660(regR)";i:17;s:0:"";i:18;s:15:"View Structure ";}}