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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
49216-49323
(+)
glycine
49469-50570 (+)
Acry_0049
Glycine cleavage system T protein
Acry_0049
Operon
DOOR ID:
308596
Acry_0049,
Acry_0050,
Acry_0051
View Structure
2
163111-163156
(-)
glutamine
162326-162671 (+)
Acry_0143
Acry_0143
Operon
DOOR ID:
308609
Acry_0138,
Acry_0139,
Acry_0140,
Acry_0141,
Acry_0142,
Acry_0143
View Structure
3
351653-351714
(-)
fluoride
350816-351140 (-)
Acry_0303
Acry_0303
Operon
DOOR ID:
308652
Acry_0303,
Acry_0304,
Acry_0305
View Structure
4
677221-677283
(+)
fluoride
677369-678323 (+)
Acry_0603
Formate hydrogenlyase subunit 4-like protein
Acry_0603
Single gene
DOOR ID:
2045612
Acry_0603
View Structure
5
1068814-1068918
(-)
TPP
1066950-1068771 (-)
Acry_0965
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Acry_0965
Operon
DOOR ID:
308795
Acry_0962,
Acry_0963,
Acry_0964,
Acry_0965
View Structure
6
2436992-2437226
(+)
cobalamin
2437361-2439671 (+)
Acry_2208
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Acry_2208
Single gene
DOOR ID:
2046042
Acry_2208
View Structure
7
2991208-2991257
(-)
mini-ykkC
2990299-2991082 (-)
Acry_2729
Acry_2729
Operon
DOOR ID:
309178
Acry_2726,
Acry_2727,
Acry_2728,
Acry_2729
View Structure
8
2993982-2994092
(-)
ykkC-yxkD
2992820-2993900 (-)
Acry_2732
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
Acry_2732
Operon
DOOR ID:
309179
Acry_2730,
Acry_2731,
Acry_2732
View Structure
9
3383994-3384202
(-)
cobalamin
3381872-3383888 (-)
Acry_3097
TonB-dependent receptor; plug
Acry_3097
Single gene
DOOR ID:
2046291
Acry_3097
View Structure
Genome:
Acidiphilium cryptum JF-5
(
NC_009484.1
);
Phylum:
Alphaproteobacteria
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