Genome: Vibrio cholerae O395 chromosome II (NC_009457.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 583753-583892 (+)MOCO584929-585442 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 304486
VC0395_A0544 (moaA),
VC0395_A0545 (moaB),
VC0395_A0546 (moaC),
VC0395_A0547 (moaD),
VC0395_A0548 (moaE)
View Structure
2 723573-723755 (+)lysine723870-725472 (+)VC0395_A0701

Putative membrane protein
VC0395_A0701Single gene

DOOR ID: 2037872
VC0395_A0701 View Structure
3 933363-933473 (+)TPP933532-934381 (+)thiD

Phosphomethylpyrimidine kinase
VC0395_A0914Single gene

DOOR ID: 2038540
VC0395_A0914 (thiD) View Structure
4 1043227-1043274 (+)mini-ykkC1043290-1043605 (+)sugE

VC0395_A1005Single gene

DOOR ID: 2038255
VC0395_A1005 (sugE) View Structure
5 1078841-1078940 (-)glycine1077377-1078748 (-)VC0395_A1032

Sodium/alanine symporter
VC0395_A1032Single gene

DOOR ID: 2037972
VC0395_A1032 View Structure
6 1339128-1339297 (+)ykoK1339396-1340752 (+)mgtE-1

Magnesium transporter
VC0395_A1260Single gene

DOOR ID: 2037956
VC0395_A1260 (mgtE-1) View Structure
7 1413802-1413888 (+)c-di-GMP-I1414001-1414589 (+)VC0395_A1325

Uncharacterized protein
VC0395_A1325single gene

DOOR ID: 2038562
VC0395_A1325 View Structure
8 2275570-2275707 (-)TPP2274513-2275506 (-)tbpA

Thiamine ABC transporter; periplasmic thiamin-binding protein

DOOR ID: 304770
VC0395_A2118 (thiP),
VC0395_A2119 (tbpA)
View Structure
9 2498360-2498584 (-)cobalamin2496480-2498316 (-)VC0395_A2342

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VC0395_A2342Single gene

DOOR ID: 2038310
VC0395_A2342 View Structure
10 2609391-2609489 (-)TPP2607352-2609290 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 304831
VC0395_A2450 (thiF),
VC0395_A2451 (thiE),
VC0395_A2452 (thiC)
View Structure
11 2649137-2649246 (-)yybP-ykoY2648489-2649092 (-)VC0395_A2497

Putative manganese exporter (Manganese exporter A)
VC0395_A2497Single gene

DOOR ID: 2038094
VC0395_A2497 View Structure
12 2956342-2956519 (-)lysine2954875-2956231 (-)lysC

VC0395_A2809Single gene

DOOR ID: 2038675
VC0395_A2809 (lysC) View Structure