About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
251798-251990
(-)
cobalamin
250652-251684 (-)
DehaBAV1_0246
DehaBAV1_0246
Operon
DOOR ID:
303929
DehaBAV1_0245,
DehaBAV1_0246
View Structure
2
608101-608227
(+)
cobalamin
608536-609550 (+)
DehaBAV1_0620
DehaBAV1_0620
Operon
DOOR ID:
304007
DehaBAV1_0620,
DehaBAV1_0621,
DehaBAV1_0622,
DehaBAV1_0623,
DehaBAV1_0624,
DehaBAV1_0625
View Structure
3
614337-614530
(+)
cobalamin
614687-615746 (+)
DehaBAV1_0626
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
DehaBAV1_0626
Operon
DOOR ID:
304008
DehaBAV1_0626,
DehaBAV1_0627,
DehaBAV1_0628,
DehaBAV1_0629
View Structure
4
692193-692288
(-)
TPP
690845-692141 (-)
DehaBAV1_0701
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
DehaBAV1_0701
Operon
DOOR ID:
304022
DehaBAV1_0699,
DehaBAV1_0700,
DehaBAV1_0701
View Structure
5
983143-983282
(+)
cobalamin
983393-984158 (+)
DehaBAV1_0993
DehaBAV1_0993
Single gene
DOOR ID:
2036932
DehaBAV1_0993
View Structure
Genome:
Dehalococcoides sp. BAV1
(
NC_009455.1
);
Phylum:
Chloroflexi
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009455.1";i:2;s:25:"Dehalococcoides sp. BAV1 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"251798-251990";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"250652-251684";i:10;s:1:"-";i:11;s:13:"DehaBAV1_0246";i:12;s:0:"";i:13;s:13:"DehaBAV1_0246";i:14;s:6:"Operon";i:15;s:6:"303929";i:16;s:27:"DehaBAV1_0245;DehaBAV1_0246";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009455.1";i:2;s:25:"Dehalococcoides sp. BAV1 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"608101-608227";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"608536-609550";i:10;s:1:"+";i:11;s:13:"DehaBAV1_0620";i:12;s:0:"";i:13;s:13:"DehaBAV1_0620";i:14;s:6:"Operon";i:15;s:6:"304007";i:16;s:83:"DehaBAV1_0620;DehaBAV1_0621;DehaBAV1_0622;DehaBAV1_0623;DehaBAV1_0624;DehaBAV1_0625";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009455.1";i:2;s:25:"Dehalococcoides sp. BAV1 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"614337-614530";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"614687-615746";i:10;s:1:"+";i:11;s:13:"DehaBAV1_0626";i:12;s:126:"Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)";i:13;s:13:"DehaBAV1_0626";i:14;s:6:"Operon";i:15;s:6:"304008";i:16;s:55:"DehaBAV1_0626;DehaBAV1_0627;DehaBAV1_0628;DehaBAV1_0629";i:17;s:89:"cobalamin biosynthetic process [GO:0009236]; nucleoside biosynthetic process [GO:0009163]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009455.1";i:2;s:25:"Dehalococcoides sp. BAV1 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"692193-692288";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"690845-692141";i:10;s:1:"-";i:11;s:13:"DehaBAV1_0701";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"DehaBAV1_0701";i:14;s:6:"Operon";i:15;s:6:"304022";i:16;s:41:"DehaBAV1_0699;DehaBAV1_0700;DehaBAV1_0701";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009455.1";i:2;s:25:"Dehalococcoides sp. BAV1 ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"983143-983282";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"983393-984158";i:10;s:1:"+";i:11;s:13:"DehaBAV1_0993";i:12;s:0:"";i:13;s:13:"DehaBAV1_0993";i:14;s:11:"Single gene";i:15;s:7:"2036932";i:16;s:13:"DehaBAV1_0993";i:17;s:0:"";i:18;s:15:"View Structure ";}}