Genome: Pelotomaculum thermopropionicum SI (NC_009454.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 82196-82409 (+)ydaO-yuaA82414-83362 (+)PTH_0087

Hypothetical membrane protein		PTH_0087Single gene

DOOR ID: 2035581		PTH_0087 View Structure
2 186028-186147 (+)MOCO186214-187141 (+)PTH_0192

Hypothetical membrane protein		PTH_0192Single gene

DOOR ID: 2035639		PTH_0192 View Structure
3 190735-190877 (+)MOCO191163-191652 (+)PTH_0195

PTH_0195Single gene

DOOR ID: 2035642		PTH_0195 View Structure
4 201391-201476 (+)c-di-GMP-I201550-203140 (+)PTH_0202

Hypothetical membrane protein		PTH_0202single gene

DOOR ID: 2035646		PTH_0202 View Structure
5 251789-251896 (+)SAM251942-253202 (+)MET2

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		PTH_0250Operon

DOOR ID: 303308		PTH_0250 (MET2),
PTH_0251		 View Structure
6 357790-357871 (+)c-di-GMP-I358043-358880 (+)PTH_0376

Predicted membrane protein		PTH_0376operon

DOOR ID: 303340		PTH_0375,
PTH_0376,
PTH_0377		 View Structure
7 428061-428228 (+)ykoK428410-429388 (+)CorA

Magnesium transport protein CorA		PTH_0448Single gene

DOOR ID: 2035716		PTH_0448 (CorA) View Structure
8 532219-532443 (+)glmS532586-534416 (+)GlmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		PTH_0539Single gene

DOOR ID: 2035753		PTH_0539 (GlmS) View Structure
9 593047-593165 (-)MOCO592010-592874 (-)TupB

ABC-type tungstate transport system; permease component		PTH_0603Operon

DOOR ID: 303384		PTH_0602 (TupB),
PTH_0603 (TupB)		 View Structure
10 609959-610201 (+)ydaO-yuaA610313-611585 (+)KamA

Lysine 2;3-aminomutase		PTH_0616Single gene

DOOR ID: 2035787		PTH_0616 (KamA) View Structure
11 615295-615357 (+)fluoride615410-617180 (+)PTH_0620

PTH_0620Single gene

DOOR ID: 2035789		PTH_0620 View Structure
12 630130-630228 (+)TPP630328-630529 (+)ThiS

Sulfur transfer protein		PTH_0639Operon

DOOR ID: 303389		PTH_0639 (ThiS),
PTH_0640 (ThiG),
PTH_0641 (ThiH),
PTH_0642,
PTH_0643 (ThiE),
PTH_0644 (ThiC)		 View Structure
13 656534-656652 (+)MOCO657239-658832 (+)PTH_0668

Iron only hydrogenase large subunit; C-terminal domain		PTH_0668Operon

DOOR ID: 303396		PTH_0668,
PTH_0669 (HybA),
PTH_0670		 View Structure
14 656698-656818 (+)MOCO657239-658832 (+)PTH_0668

Iron only hydrogenase large subunit; C-terminal domain		PTH_0668Operon

DOOR ID: 303396		PTH_0668,
PTH_0669 (HybA),
PTH_0670		 View Structure
15 656925-657045 (+)MOCO657239-658832 (+)PTH_0668

Iron only hydrogenase large subunit; C-terminal domain		PTH_0668Operon

DOOR ID: 303396		PTH_0668,
PTH_0669 (HybA),
PTH_0670		 View Structure
16 667698-667820 (+)MOCO667933-669571 (+)AtoC

Response regulator		PTH_0678Single gene

DOOR ID: 2035815		PTH_0678 (AtoC) View Structure
17 804550-804637 (+)c-di-GMP-I804712-805357 (+)PTH_0799

Hypothetical signaling protein		PTH_0799operon

DOOR ID: 303428		PTH_0799,
PTH_0800,
PTH_0801		 View Structure
18 950845-951082 (+)cobalamin951181-952249 (+)CobT

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		PTH_0931Single gene

DOOR ID: 2035901		PTH_0931 (CobT) View Structure
19 972965-973276 (+)cobalamin973404-974115 (+)CbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		PTH_0949Single gene

DOOR ID: 2035915		PTH_0949 (CbiM) View Structure
20 1056307-1056413 (-)SAH1055123-1056029 (-)PTH_1023

PTH_1023Single gene

DOOR ID: 2035942		PTH_1023 View Structure
21 1181119-1181203 (+)c-di-GMP-I1181270-1182953 (+)PulE

Type II secretory pathway; ATPase PulE/tfp pilus assembly pathway; ATPase PilB		PTH_1145operon

DOOR ID: 303500		PTH_1145 (PulE),
PTH_1146 (PilT),
PTH_1147 (PulF)		 View Structure
22 1365191-1365343 (+)ydaO-yuaA1365349-1365973 (+)PTH_1322

PTH_1322Single gene

DOOR ID: 2036033		PTH_1322 View Structure
23 1533734-1533850 (+)SAM1533857-1535144 (+)PTH_1472

PTH_1472Operon

DOOR ID: 303570		PTH_1472,
PTH_1473 (NapF),
PTH_1474		 View Structure
24 1548337-1548614 (-)cobalamin1544488-1548013 (-)PTH_1483

Hypothetical membrane protein		PTH_1483Single gene

DOOR ID: 2036091		PTH_1483 View Structure
25 1635122-1635210 (+)c-di-GMP-I1635260-1635848 (+)RpoE

DNA-directed RNA polymerase specialized sigma subunit		PTH_1558operon

DOOR ID: 303590		PTH_1558 (RpoE),
PTH_1559		 View Structure
26 1790414-1790531 (+)MOCO1790718-1791717 (+)HyaA

Ni;Fe-hydrogenase I small subunit		PTH_1701Operon

DOOR ID: 303617		PTH_1701 (HyaA),
PTH_1702 (HyaB),
PTH_1703 (HybA),
PTH_1704 (NrfD)		 View Structure
27 1845507-1845635 (-)FMN1844241-1845372 (-)PTH_1761

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		PTH_1761Operon

DOOR ID: 303629		PTH_1758 (ribH),
PTH_1759,
PTH_1760 (RibC),
PTH_1761		 View Structure
28 1981930-1982019 (+)c-di-GMP-I1982492-1982876 (+)RpoE

DNA-directed RNA polymerase specialized sigma subunit; sigma24 homolog		PTH_1893single gene

DOOR ID: 2036242		PTH_1893 (RpoE) View Structure
29 2201300-2201437 (-)c-di-GMP-I2200824-2201226 (-)FlgB

Flagellar basal body rod protein FlgB		PTH_2092operon

DOOR ID: 303693		PTH_2084 (FliJ),
PTH_2085 (FliI),
PTH_2086,
PTH_2087 (FliH),
PTH_2088 (FliG),
PTH_2089 (fliF),
PTH_2090 (FliE),
PTH_2091 (FlgC),
PTH_2092 (FlgB)		 View Structure
30 2311724-2311891 (+)ydaO-yuaA2312026-2313865 (+)PotE

Amino acid transporters		PTH_2207Single gene

DOOR ID: 2036371		PTH_2207 (PotE) View Structure
31 2370211-2370330 (-)MOCO2369950-2370097 (-)PTH_2266

PTH_2266Single gene

DOOR ID: 2036396		PTH_2266 View Structure
32 2654398-2654559 (-)ykkC-yxkD2653717-2654257 (-)PTH_2548

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		PTH_2548Operon

DOOR ID: 303786		PTH_2544 (PurM),
PTH_2545 (PurF),
PTH_2546 (PurC),
PTH_2547 (PurB),
PTH_2548		 View Structure
33 2706440-2706670 (-)ydaO-yuaA2705636-2706437 (-)PTH_2599

Hypothetical membrane protein		PTH_2599Single gene

DOOR ID: 2036553		PTH_2599 View Structure
34 2751211-2751332 (-)MOCO2750137-2751202 (-)PTH_2646

Hypothetical formate dehydrogenase		PTH_2646Operon

DOOR ID: 303812		PTH_2645,
PTH_2646,
PTH_2647,
PTH_2648 (NuoF),
PTH_2649 (NuoE),
PTH_2650,
PTH_2651 (FocA)		 View Structure
35 2800816-2800899 (-)c-di-GMP-I2799861-2800407 (-)PTH_2697

Uncharacterized protein		PTH_2697single gene

DOOR ID: 2036598		PTH_2697 View Structure
36 2908378-2908465 (+)c-di-GMP-II2908645-2911972 (+)PTH_2805

Hypothetical membrane protein		PTH_2805Single gene

DOOR ID: 2036647		PTH_2805 View Structure