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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
94689-94892
(+)
cobalamin
94954-96778 (+)
Fjoh_0091
TonB-dependent receptor
Fjoh_0091
Operon
DOOR ID:
299679
Fjoh_0091,
Fjoh_0092
View Structure
2
1615227-1615419
(+)
cobalamin
1615701-1617021 (+)
Fjoh_1410
PKD domain containing protein
Fjoh_1410
Single gene
DOOR ID:
2029142
Fjoh_1410
View Structure
3
1719655-1719763
(+)
SAM
1719836-1720826 (+)
Fjoh_1493
Peptidase family S33 (1)
Fjoh_1493
Operon
DOOR ID:
299957
Fjoh_1493,
Fjoh_1494
View Structure
4
1736937-1737053
(+)
SAM
1737380-1738385 (+)
Fjoh_1508
Homocysteine S-methyltransferase
Fjoh_1508
Single gene
DOOR ID:
2029189
Fjoh_1508
View Structure
5
1838822-1838915
(+)
TPP
1838999-1841150 (+)
Fjoh_1588
TonB-dependent receptor
Fjoh_1588
Single gene
DOOR ID:
2029222
Fjoh_1588
View Structure
6
1853931-1854027
(-)
TPP
1853656-1853863 (-)
Fjoh_1604
Thiamine biosynthesis protein ThiS
Fjoh_1604
Single gene
DOOR ID:
2029226
Fjoh_1604
View Structure
7
2160912-2161150
(-)
cobalamin
2158765-2160811 (-)
Fjoh_1875
TonB-dependent receptor
Fjoh_1875
Operon
DOOR ID:
300029
Fjoh_1873,
Fjoh_1874,
Fjoh_1875
View Structure
8
4776182-4776282
(-)
SAM
4774955-4775945 (-)
Fjoh_3991
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Fjoh_3991
Single gene
DOOR ID:
2030289
Fjoh_3991
View Structure
Genome:
Flavobacterium johnsoniae UW101
(
NC_009441.1
);
Phylum:
Bacteroidetes/Chlorobi group
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