About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
237778-237930
(+)
ydaO-yuaA
238077-239301 (+)
Csac_0232
Lysine 2;3-aminomutase YodO family protein
Csac_0232
Single gene
DOOR ID:
2023462
Csac_0232
View Structure
2
255822-255947
(+)
TPP
256118-256313 (+)
Csac_0250
Thiamine biosynthesis protein ThiS
Csac_0250
Single gene
DOOR ID:
2023469
Csac_0250
View Structure
3
325232-325454
(-)
cobalamin
322692-324966 (-)
Csac_0302
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
Csac_0302
Single gene
DOOR ID:
2023487
Csac_0302
View Structure
4
677416-677612
(+)
glmS
677688-679524 (+)
Csac_0606
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Csac_0606
Single gene
DOOR ID:
2023599
Csac_0606
View Structure
5
751276-751339
(+)
fluoride
751448-751850 (+)
Csac_0673
Putative fluoride ion transporter CrcB
Csac_0673
Operon
DOOR ID:
297080
Csac_0673,
Csac_0674
View Structure
6
782565-782643
(+)
fluoride
782673-783342 (+)
Csac_0697
Csac_0697
Single gene
DOOR ID:
2024088
Csac_0697
View Structure
7
818978-819128
(-)
ydaO-yuaA
817613-818972 (-)
Csac_0724
Pyruvate carboxyltransferase
Csac_0724
Single gene
DOOR ID:
2023647
Csac_0724
View Structure
8
894907-895035
(-)
FMN
893672-894788 (-)
Csac_0794
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Csac_0794
Operon
DOOR ID:
297107
Csac_0791,
Csac_0792,
Csac_0793,
Csac_0794
View Structure
9
912799-912898
(-)
c-di-GMP-I
910888-912556 (-)
Csac_0810
Metal dependent phosphohydrolase
Csac_0810
operon
DOOR ID:
297110
Csac_0808,
Csac_0809,
Csac_0810
View Structure
10
962958-963097
(+)
SAM
963213-964404 (+)
Csac_0857
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Csac_0857
Single gene
DOOR ID:
2023680
Csac_0857
View Structure
11
1094763-1094897
(+)
MOCO
1094979-1095795 (+)
Csac_0972
ABC-type tungstate transport system permease component-like protein
Csac_0972
Operon
DOOR ID:
297145
Csac_0972,
Csac_0973,
Csac_0974,
Csac_0975,
Csac_0976,
Csac_0977,
Csac_0978
View Structure
12
1179808-1179970
(+)
ydaO-yuaA
1179977-1180934 (+)
Csac_1052
NLP/P60 protein
Csac_1052
Single gene
DOOR ID:
2023711
Csac_1052
View Structure
13
1202000-1202089
(+)
c-di-GMP-I
1202294-1204244 (+)
Csac_1074
Uncharacterized protein
Csac_1074
single gene
DOOR ID:
2023714
Csac_1074
View Structure
14
1205666-1205755
(+)
c-di-GMP-I
1206368-1211624 (+)
Csac_1076
Endoglucanase
Csac_1076
single gene
DOOR ID:
2023716
Csac_1076
View Structure
15
1386114-1386274
(+)
ykoK
1386598-1387849 (+)
Csac_1222
MgtE intracellular region
Csac_1222
Operon
DOOR ID:
297194
Csac_1222,
Csac_1223
View Structure
16
1731346-1731467
(+)
SAM
1731573-1732848 (+)
Csac_1574
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Csac_1574
Single gene
DOOR ID:
2023837
Csac_1574
View Structure
17
1745530-1745713
(-)
lysine
1744401-1745403 (-)
Csac_1584
Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)
Csac_1584
Operon
DOOR ID:
297261
Csac_1581,
Csac_1582,
Csac_1583,
Csac_1584
View Structure
18
2504301-2504398
(-)
c-di-GMP-I
2503745-2504165 (-)
Csac_2385
Uncharacterized protein
Csac_2385
single gene
DOOR ID:
2023969
Csac_2385
View Structure
Genome:
Caldicellulosiruptor saccharolyticus DSM 8903
(
NC_009437.1
);
Phylum:
Firmicutes
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"237778-237930";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"238077-239301";i:10;s:1:"+";i:11;s:9:"Csac_0232";i:12;s:43:"Lysine 2;3-aminomutase YodO family protein ";i:13;s:9:"Csac_0232";i:14;s:11:"Single gene";i:15;s:7:"2023462";i:16;s:9:"Csac_0232";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"255822-255947";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"256118-256313";i:10;s:1:"+";i:11;s:9:"Csac_0250";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Csac_0250";i:14;s:11:"Single gene";i:15;s:7:"2023469";i:16;s:9:"Csac_0250";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"325232-325454";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"322692-324966";i:10;s:1:"-";i:11;s:9:"Csac_0302";i:12;s:73:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)";i:13;s:9:"Csac_0302";i:14;s:11:"Single gene";i:15;s:7:"2023487";i:16;s:9:"Csac_0302";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"677416-677612";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"677688-679524";i:10;s:1:"+";i:11;s:9:"Csac_0606";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Csac_0606";i:14;s:11:"Single gene";i:15;s:7:"2023599";i:16;s:9:"Csac_0606";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"751276-751339";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"751448-751850";i:10;s:1:"+";i:11;s:9:"Csac_0673";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"Csac_0673";i:14;s:6:"Operon";i:15;s:6:"297080";i:16;s:19:"Csac_0673;Csac_0674";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"782565-782643";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"782673-783342";i:10;s:1:"+";i:11;s:9:"Csac_0697";i:12;s:0:"";i:13;s:9:"Csac_0697";i:14;s:11:"Single gene";i:15;s:7:"2024088";i:16;s:9:"Csac_0697";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"818978-819128";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"817613-818972";i:10;s:1:"-";i:11;s:9:"Csac_0724";i:12;s:28:"Pyruvate carboxyltransferase";i:13;s:9:"Csac_0724";i:14;s:11:"Single gene";i:15;s:7:"2023647";i:16;s:9:"Csac_0724";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"894907-895035";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"893672-894788";i:10;s:1:"-";i:11;s:9:"Csac_0794";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Csac_0794";i:14;s:6:"Operon";i:15;s:6:"297107";i:16;s:39:"Csac_0791;Csac_0792;Csac_0793;Csac_0794";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"912799-912898";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"910888-912556";i:10;s:1:"-";i:11;s:9:"Csac_0810";i:12;s:32:"Metal dependent phosphohydrolase";i:13;s:9:"Csac_0810";i:14;s:6:"operon";i:15;s:6:"297110";i:16;s:29:"Csac_0808;Csac_0809;Csac_0810";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"962958-963097";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"963213-964404";i:10;s:1:"+";i:11;s:9:"Csac_0857";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"Csac_0857";i:14;s:11:"Single gene";i:15;s:7:"2023680";i:16;s:9:"Csac_0857";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1094763-1094897";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1094979-1095795";i:10;s:1:"+";i:11;s:9:"Csac_0972";i:12;s:67:"ABC-type tungstate transport system permease component-like protein";i:13;s:9:"Csac_0972";i:14;s:6:"Operon";i:15;s:6:"297145";i:16;s:69:"Csac_0972;Csac_0973;Csac_0974;Csac_0975;Csac_0976;Csac_0977;Csac_0978";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1179808-1179970";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1179977-1180934";i:10;s:1:"+";i:11;s:9:"Csac_1052";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Csac_1052";i:14;s:11:"Single gene";i:15;s:7:"2023711";i:16;s:9:"Csac_1052";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1202000-1202089";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1202294-1204244";i:10;s:1:"+";i:11;s:9:"Csac_1074";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Csac_1074";i:14;s:11:"single gene";i:15;s:7:"2023714";i:16;s:9:"Csac_1074";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1205666-1205755";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1206368-1211624";i:10;s:1:"+";i:11;s:9:"Csac_1076";i:12;s:14:"Endoglucanase ";i:13;s:9:"Csac_1076";i:14;s:11:"single gene";i:15;s:7:"2023716";i:16;s:9:"Csac_1076";i:17;s:40:"cellulose catabolic process [GO:0030245]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1386114-1386274";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1386598-1387849";i:10;s:1:"+";i:11;s:9:"Csac_1222";i:12;s:25:"MgtE intracellular region";i:13;s:9:"Csac_1222";i:14;s:6:"Operon";i:15;s:6:"297194";i:16;s:19:"Csac_1222;Csac_1223";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1731346-1731467";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1731573-1732848";i:10;s:1:"+";i:11;s:9:"Csac_1574";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Csac_1574";i:14;s:11:"Single gene";i:15;s:7:"2023837";i:16;s:9:"Csac_1574";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1745530-1745713";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1744401-1745403";i:10;s:1:"-";i:11;s:9:"Csac_1584";i:12;s:112:"Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)";i:13;s:9:"Csac_1584";i:14;s:6:"Operon";i:15;s:6:"297261";i:16;s:39:"Csac_1581;Csac_1582;Csac_1583;Csac_1584";i:17;s:260:"'de novo' L-methionine biosynthetic process [GO:0071266]; diaminopimelate biosynthetic process [GO:0019877]; isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_009437.1";i:2;s:46:"Caldicellulosiruptor saccharolyticus DSM 8903 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2504301-2504398";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2503745-2504165";i:10;s:1:"-";i:11;s:9:"Csac_2385";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Csac_2385";i:14;s:11:"single gene";i:15;s:7:"2023969";i:16;s:9:"Csac_2385";i:17;s:0:"";i:18;s:15:"View Structure ";}}