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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
386964-387171
(-)
cobalamin
386477-386879 (-)
Rsph17025_0393
Rsph17025_0393
Operon
DOOR ID:
294482
Rsph17025_0391,
Rsph17025_0392,
Rsph17025_0393
View Structure
2
584969-585066
(+)
TPP
585113-585902 (+)
Rsph17025_0583
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Rsph17025_0583
Operon
DOOR ID:
294519
Rsph17025_0583,
Rsph17025_0584,
Rsph17025_0585,
Rsph17025_0586,
Rsph17025_0587,
Rsph17025_0588
View Structure
3
637462-637539
(+)
sam-alpha
637589-638771 (+)
Rsph17025_0638
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Rsph17025_0638
Single gene
DOOR ID:
2018948
Rsph17025_0638
View Structure
4
1410118-1410316
(+)
cobalamin
1410445-1412413 (+)
Rsph17025_1382
TonB-dependent receptor
Rsph17025_1382
Operon
DOOR ID:
294675
Rsph17025_1382,
Rsph17025_1383,
Rsph17025_1384,
Rsph17025_1385,
Rsph17025_1386
View Structure
5
1554899-1555094
(+)
cobalamin
1555194-1555554 (+)
Rsph17025_1516
Rsph17025_1516
Operon
DOOR ID:
294703
Rsph17025_1516,
Rsph17025_1517,
Rsph17025_1518
(cobN)
,
Rsph17025_1519
(cobH)
,
Rsph17025_1520,
Rsph17025_1521
View Structure
6
2340238-2340325
(-)
glycine
2338966-2340100 (-)
gcvT
Glycine cleavage system T protein
Rsph17025_2299
Operon
DOOR ID:
294864
Rsph17025_2297,
Rsph17025_2298,
Rsph17025_2299
(gcvT)
View Structure
7
2346763-2346884
(+)
ykkC-yxkD
2347184-2348717 (-)
Rsph17025_2305
Propionyl-CoA carboxylase
Rsph17025_2305
Single gene
DOOR ID:
2019473
Rsph17025_2305
View Structure
8
2843889-2843988
(+)
TPP
2844022-2845006 (+)
tbpA
ABC transporter; periplasmic binding protein; thiB subfamily
Rsph17025_2798
Operon
DOOR ID:
294976
Rsph17025_2798
(tbpA)
,
Rsph17025_2799
(thiP)
,
Rsph17025_2800
View Structure
Genome:
Rhodobacter sphaeroides ATCC 17025
(
NC_009428.1
);
Phylum:
Alphaproteobacteria
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