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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
499497-499686
(+)
FMN
499927-500581 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPDSF_0441
Single gene
DOOR ID:
2016964
YPDSF_0441
(ribB)
View Structure
2
1535616-1535815
(+)
yybP-ykoY
1535825-1536395 (+)
YPDSF_1370
Putative manganese efflux pump MntP
YPDSF_1370
Single gene
DOOR ID:
2017369
YPDSF_1370
View Structure
3
2497247-2497351
(-)
TPP
2496322-2497123 (-)
YPDSF_2209
YPDSF_2209
Single gene
DOOR ID:
2017755
YPDSF_2209
View Structure
4
2886744-2886890
(-)
MOCO
2885196-2885676 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPDSF_2537
Operon
DOOR ID:
293958
YPDSF_2535
(moaE)
,
YPDSF_2536
(moaD)
,
YPDSF_2537
(moaC)
,
YPDSF_2538
(moaA)
View Structure
5
3010272-3010335
(+)
fluoride
3010435-3010819 (+)
YPDSF_2658
YPDSF_2658
Single gene
DOOR ID:
2017974
YPDSF_2658
View Structure
6
3533309-3533446
(+)
TPP
3534476-3536096 (+)
thiP
YPDSF_3113
Operon
DOOR ID:
294076
YPDSF_3112
(tbpA)
,
YPDSF_3113
(thiP)
,
YPDSF_3114
(thiQ)
View Structure
7
4047740-4048002
(-)
cobalamin
4045775-4047671 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPDSF_3522
Operon
DOOR ID:
294152
YPDSF_3521,
YPDSF_3522
(btuB)
View Structure
8
4157696-4157742
(-)
mini-ykkC
4156840-4157197 (+)
YPDSF_3617
YPDSF_3617
Operon
DOOR ID:
294168
YPDSF_3614,
YPDSF_3615,
YPDSF_3616,
YPDSF_3617
View Structure
9
4294884-4295009
(+)
TPP
4295142-4297188 (+)
YPDSF_3736
YPDSF_3736
Operon
DOOR ID:
294194
YPDSF_3736,
YPDSF_3737,
YPDSF_3738,
YPDSF_3739
View Structure
Genome:
Yersinia pestis Pestoides F
(
NC_009381.1
);
Phylum:
Gammaproteobacteria
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