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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79218-79396
(+)
cobalamin
79447-81283 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ASA_0076
Single gene
DOOR ID:
2011130
ASA_0076
(btuB)
View Structure
2
365078-365165
(+)
c-di-GMP-I
365304-366681 (+)
lafK
Two-component system lateral flagellar response regulator
ASA_0353
operon
DOOR ID:
290889
ASA_0353
(lafK)
,
ASA_0354
(lfiE)
,
ASA_0355
(fliF)
,
ASA_0356
(fliG)
,
ASA_0357
(lfiH)
,
ASA_0358
(lfiI)
,
ASA_0359
(lfiJ)
View Structure
3
482035-482141
(+)
yybP-ykoY
482230-483217 (+)
ASA_0471
Ca2+/Na+ antiporter
ASA_0471
Single gene
DOOR ID:
2011265
ASA_0471
View Structure
4
610617-610702
(-)
c-di-GMP-I
609125-610583 (-)
ASA_0604
Chitin-binding protein; carbohydrate-binding module family 33
ASA_0604
single gene
DOOR ID:
2011321
ASA_0604
View Structure
5
899660-899745
(+)
c-di-GMP-I
899830-902893 (+)
cdxA
Chitinase
ASA_0873
single gene
DOOR ID:
2011445
ASA_0873
(cdxA)
View Structure
6
1302132-1302211
(+)
glycine
1302438-1303815 (+)
ASA_1257
Sodium/alanine symporter
ASA_1257
Single gene
DOOR ID:
2011609
ASA_1257
View Structure
7
1302217-1302332
(+)
glycine
1302438-1303815 (+)
ASA_1257
Sodium/alanine symporter
ASA_1257
Single gene
DOOR ID:
2011609
ASA_1257
View Structure
8
1344316-1344475
(+)
FMN
1344579-1345233 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ASA_1293
Single gene
DOOR ID:
2011640
ASA_1293
(ribB)
View Structure
9
1566344-1566513
(+)
ykoK
1566620-1567979 (+)
mgtE
Magnesium transporter MgtE
ASA_1500
Single gene
DOOR ID:
2011706
ASA_1500
(mgtE)
View Structure
10
1862074-1862245
(+)
lysine
1862331-1863912 (+)
nhaC
Na+/H+ antiporter
ASA_1781
Single gene
DOOR ID:
2011821
ASA_1781
(nhaC)
View Structure
11
2755273-2755497
(+)
lysine
2755586-2756939 (+)
lysC
Aspartokinase
ASA_2578
Single gene
DOOR ID:
2012215
ASA_2578
(lysC)
View Structure
12
2971068-2971207
(-)
MOCO
2969324-2969891 (-)
napF
Ferredoxin-type protein NapF
ASA_2773
Operon
DOOR ID:
291293
ASA_2772
(napD)
,
ASA_2773
(napF)
View Structure
13
3695846-3695936
(+)
TPP
3696041-3697022 (+)
thiB
ABC-type thiamine transporter; periplasmic binding protein
ASA_3415
Operon
DOOR ID:
291399
ASA_3415
(thiB)
,
ASA_3416
(thiP)
,
ASA_3417
(thiQ)
View Structure
14
4015954-4016040
(-)
c-di-GMP-I
4015532-4015865 (-)
ASA_3724
Uncharacterized protein
ASA_3724
single gene
DOOR ID:
2012786
ASA_3724
View Structure
15
4191397-4191510
(-)
TPP
4189127-4191134 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ASA_3905
Operon
DOOR ID:
291479
ASA_3900
(thiH)
,
ASA_3901
(thiG)
,
ASA_3902
(thiS)
,
ASA_3903
(thiF)
,
ASA_3904
(thiE)
,
ASA_3905
(thiC)
View Structure
Genome:
Aeromonas salmonicida subsp. salmonicida A449
(
NC_009348.1
);
Phylum:
Gammaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"79218-79396";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"79447-81283";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:8:"ASA_0076";i:14;s:11:"Single gene";i:15;s:7:"2011130";i:16;s:14:"ASA_0076(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"365078-365165";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"365304-366681";i:10;s:1:"+";i:11;s:4:"lafK";i:12;s:57:"Two-component system lateral flagellar response regulator";i:13;s:8:"ASA_0353";i:14;s:6:"operon";i:15;s:6:"290889";i:16;s:104:"ASA_0353(lafK);ASA_0354(lfiE);ASA_0355(fliF);ASA_0356(fliG);ASA_0357(lfiH);ASA_0358(lfiI);ASA_0359(lfiJ)";i:17;s:95:"phosphorelay signal transduction system [GO:0000160]; transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"482035-482141";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"482230-483217";i:10;s:1:"+";i:11;s:8:"ASA_0471";i:12;s:19:"Ca2+/Na+ antiporter";i:13;s:8:"ASA_0471";i:14;s:11:"Single gene";i:15;s:7:"2011265";i:16;s:8:"ASA_0471";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"610617-610702";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"609125-610583";i:10;s:1:"-";i:11;s:8:"ASA_0604";i:12;s:61:"Chitin-binding protein; carbohydrate-binding module family 33";i:13;s:8:"ASA_0604";i:14;s:11:"single gene";i:15;s:7:"2011321";i:16;s:8:"ASA_0604";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"899660-899745";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"899830-902893";i:10;s:1:"+";i:11;s:4:"cdxA";i:12;s:9:"Chitinase";i:13;s:8:"ASA_0873";i:14;s:11:"single gene";i:15;s:7:"2011445";i:16;s:14:"ASA_0873(cdxA)";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1302132-1302211";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1302438-1303815";i:10;s:1:"+";i:11;s:8:"ASA_1257";i:12;s:24:"Sodium/alanine symporter";i:13;s:8:"ASA_1257";i:14;s:11:"Single gene";i:15;s:7:"2011609";i:16;s:8:"ASA_1257";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1302217-1302332";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1302438-1303815";i:10;s:1:"+";i:11;s:8:"ASA_1257";i:12;s:24:"Sodium/alanine symporter";i:13;s:8:"ASA_1257";i:14;s:11:"Single gene";i:15;s:7:"2011609";i:16;s:8:"ASA_1257";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1344316-1344475";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1344579-1345233";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"ASA_1293";i:14;s:11:"Single gene";i:15;s:7:"2011640";i:16;s:14:"ASA_1293(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1566344-1566513";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1566620-1567979";i:10;s:1:"+";i:11;s:4:"mgtE";i:12;s:26:"Magnesium transporter MgtE";i:13;s:8:"ASA_1500";i:14;s:11:"Single gene";i:15;s:7:"2011706";i:16;s:14:"ASA_1500(mgtE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1862074-1862245";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1862331-1863912";i:10;s:1:"+";i:11;s:4:"nhaC";i:12;s:17:"Na+/H+ antiporter";i:13;s:8:"ASA_1781";i:14;s:11:"Single gene";i:15;s:7:"2011821";i:16;s:14:"ASA_1781(nhaC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2755273-2755497";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2755586-2756939";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"ASA_2578";i:14;s:11:"Single gene";i:15;s:7:"2012215";i:16;s:14:"ASA_2578(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2971068-2971207";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2969324-2969891";i:10;s:1:"-";i:11;s:4:"napF";i:12;s:28:"Ferredoxin-type protein NapF";i:13;s:8:"ASA_2773";i:14;s:6:"Operon";i:15;s:6:"291293";i:16;s:29:"ASA_2772(napD);ASA_2773(napF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3695846-3695936";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3696041-3697022";i:10;s:1:"+";i:11;s:4:"thiB";i:12;s:58:"ABC-type thiamine transporter; periplasmic binding protein";i:13;s:8:"ASA_3415";i:14;s:6:"Operon";i:15;s:6:"291399";i:16;s:44:"ASA_3415(thiB);ASA_3416(thiP);ASA_3417(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4015954-4016040";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"4015532-4015865";i:10;s:1:"-";i:11;s:8:"ASA_3724";i:12;s:23:"Uncharacterized protein";i:13;s:8:"ASA_3724";i:14;s:11:"single gene";i:15;s:7:"2012786";i:16;s:8:"ASA_3724";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_009348.1";i:2;s:45:"Aeromonas salmonicida subsp. salmonicida A449";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4191397-4191510";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4189127-4191134";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"ASA_3905";i:14;s:6:"Operon";i:15;s:6:"291479";i:16;s:89:"ASA_3900(thiH);ASA_3901(thiG);ASA_3902(thiS);ASA_3903(thiF);ASA_3904(thiE);ASA_3905(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
